CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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HCAG_08016
(
Histoplasma capsulatum
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
HCAG_08016
T26004_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCAG_08016T0
RanBP ZF
146
164
SNATWVCPICTYSNPLPLN
HCAG_08016T0
RanBP ZF
249
272
ACPRCTFANHPSLLECEICGASLK
Links
Other
RanBP ZF
family RBPs
Other
Histoplasma capsulatum
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_07164
Blastomyces dermatitidis
BDBG_07164
N
0.864
CIMG_08661
Coccidioides immitis
CIMG_08661
N
0.814
PMAA_085380
Penicillium marneffei
PMAA_085380
N
0.791
UREG_02651
Uncinocarpus reesii
UREG_02651
N
0.791
CPSG_05597
Coccidioides posadasii
CPSG_05597
N
0.791
AO090206000081
Aspergillus oryzae
CADAORAG00012242
N
0.767
AFLA_114740
Aspergillus flavus
CADAFLAG00013392
N
0.767
Pc13g06240
Penicillium chrysogenum
Pc13g06240
N
0.744
fgenesh1_pm.00795_#_61
Aspergillus carbonarius
fgenesh1_pm.00795_#_61
N
0.744
estExt_Genewise1.C_30334
Cochliobolus heterostrophus C5
estExt_Genewise1.C_30334
N
0.744
An14g00750
Aspergillus niger
CADANGAG00011011
N
0.744
ATEG_02228
Aspergillus terreus
CADATEAG00000017
N
0.744
AB01983.1
Alternaria brassicicola
AB01983.1
N
0.721
ACLA_054290
Aspergillus clavatus
CADACLAG00005245
N
0.721
estExt_fgenesh1_pg.C_chr_40551
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_40551
N
0.705