CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_chr_40551
(
Mycosphaerella graminicola
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
estExt_fgenesh1_pg.C_chr_40551
T27402_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_chr_40551
RanBP ZF
140
156
ATWICPICGLSNPVPSN
estExt_fgenesh1_pg.C_chr_40551
RanBP ZF
227
251
QCPRCTFQNHPSLSTCEICGASLQN
Links
Other
RanBP ZF
family RBPs
Other
Mycosphaerella graminicola
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.00795_#_61
Aspergillus carbonarius
fgenesh1_pm.00795_#_61
N
0.786
Pc13g06240
Penicillium chrysogenum
Pc13g06240
N
0.767
AO090206000081
Aspergillus oryzae
CADAORAG00012242
N
0.744
estExt_Genewise1.C_30334
Cochliobolus heterostrophus C5
estExt_Genewise1.C_30334
N
0.744
AFLA_114740
Aspergillus flavus
CADAFLAG00013392
N
0.744
ATEG_02228
Aspergillus terreus
CADATEAG00000017
N
0.744
PMAA_085380
Penicillium marneffei
PMAA_085380
N
0.744
AB01983.1
Alternaria brassicicola
AB01983.1
N
0.744
estExt_fgenesh1_pg.C_110327
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_110327
N
0.721
An14g00750
Aspergillus niger
CADANGAG00011011
N
0.721
ACLA_054290
Aspergillus clavatus
CADACLAG00005245
N
0.721
UREG_02651
Uncinocarpus reesii
UREG_02651
N
0.721
e_gw1.3.693.1
Trichoderma reesei
e_gw1.3.693.1
N
0.714
FOXG_08443
Fusarium oxysporum
FOXG_08443
N
0.714
fgenesh1_pg.C_scaffold_13000098
Trichoderma virens
fgenesh1_pg.C_scaffold_13000098
N
0.714
CPSG_05597
Coccidioides posadasii
CPSG_05597
N
0.714
FGSG_05263
Fusarium graminearum
FGSG_05263
N
0.714
HCAG_08016
Histoplasma capsulatum
HCAG_08016
N
0.705
fgenesh1_pg.C_scaffold_8000400
Trichoderma atroviride
fgenesh1_pg.C_scaffold_8000400
N
0.705
MCYG_02556
Microsporum canis
MCYG_02556
N
0.705