CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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An14g00750
(
Aspergillus niger
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
CADANGAG00011011
T26233_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANGAP00010796
RanBP ZF
133
150
NATWVCPICSFSNPVPSN
CADANGAP00010796
RanBP ZF
224
245
SCPRCTFVNHPSLIECEMCGAS
Links
Other
RanBP ZF
family RBPs
Other
Aspergillus niger
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ATEG_02228
Aspergillus terreus
CADATEAG00000017
N
0.950
PMAA_085380
Penicillium marneffei
PMAA_085380
N
0.925
fgenesh1_pm.00795_#_61
Aspergillus carbonarius
fgenesh1_pm.00795_#_61
N
0.900
ACLA_054290
Aspergillus clavatus
CADACLAG00005245
N
0.875
AB01983.1
Alternaria brassicicola
AB01983.1
N
0.850
Pc13g06240
Penicillium chrysogenum
Pc13g06240
N
0.833
MCYG_02556
Microsporum canis
MCYG_02556
N
0.833
AO090206000081
Aspergillus oryzae
CADAORAG00012242
N
0.829
AFLA_114740
Aspergillus flavus
CADAFLAG00013392
N
0.829
UREG_02651
Uncinocarpus reesii
UREG_02651
N
0.829
estExt_Genewise1.C_30334
Cochliobolus heterostrophus C5
estExt_Genewise1.C_30334
N
0.825
FGSG_05263
Fusarium graminearum
FGSG_05263
N
0.800
FOXG_08443
Fusarium oxysporum
FOXG_08443
N
0.800
CPSG_05597
Coccidioides posadasii
CPSG_05597
N
0.786
e_gw1.3.693.1
Trichoderma reesei
e_gw1.3.693.1
N
0.786
fgenesh1_pg.C_scaffold_13000098
Trichoderma virens
fgenesh1_pg.C_scaffold_13000098
N
0.786
e_gw1.18.954.1
Nectria haematococca
e_gw1.18.954.1
N
0.780
CIMG_08661
Coccidioides immitis
CIMG_08661
N
0.767
fgenesh1_pg.C_scaffold_8000400
Trichoderma atroviride
fgenesh1_pg.C_scaffold_8000400
N
0.767
TRV_06609
Trichophyton verrucosum
TRV_06609
N
0.756
ARB_03559
Arthroderma benhamiae
ARB_03559
N
0.756
TESG_07117
Trichophyton tonsurans
TESG_07117
N
0.756
TERG_05645
Trichophyton rubrum
TERG_05645
N
0.756
HCAG_08016
Histoplasma capsulatum
HCAG_08016
N
0.744
estExt_fgenesh1_pg.C_chr_40551
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_40551
N
0.721