CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RYBP
(
Echinops telfairi
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
ENSETEG00000015145
T26444_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000012275
RanBP ZF
12
38
EGFWDCSVCTFRNSAEPFKCSICDVRK
Links
Other
RanBP ZF
family RBPs
Other
Echinops telfairi
RBPs
90 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Rybp
Rattus norvegicus
ENSRNOG00000005353
N
0.963
RYBP
Sorex araneus
ENSSARG00000011312
N
0.963
RYBP
Tupaia belangeri
ENSTBEG00000003789
N
0.963
RYBP
Pteropus vampyrus
ENSPVAG00000012905
N
0.963
RYBP
Pan troglodytes
ENSPTRG00000015105
N
0.963
RYBP
Oryctolagus cuniculus
ENSOCUG00000011730
N
0.963
RYBP
Otolemur garnettii
ENSOGAG00000007809
N
0.963
ENSPPYG00000013718
Pongo pygmaeus
ENSPPYG00000013718
N
0.963
RYBP
Taeniopygia guttata
ENSTGUG00000009932
N
0.963
Ame_R002450
Ailuropoda melanoleuca
Ame_R002450
N
0.963
RYBP
Dasypus novemcinctus
ENSDNOG00000015175
N
0.963
LOC100062395
Equus caballus
ENSECAG00000000266
N
0.963
ENSEEUG00000011620
Erinaceus europaeus
ENSEEUG00000011620
N
0.963
LOC100393237
Callithrix jacchus
ENSCJAG00000015125
N
0.963
RYBP
Choloepus hoffmanni
ENSCHOG00000011528
N
0.963
RYBP
Anolis carolinensis
ENSACAG00000014789
N
0.963
RYBP
Canis familiaris
ENSCAFG00000006441
N
0.963
Rybp
Mus musculus
ENSMUSG00000072872
N
0.963
RYBP
Tursiops truncatus
ENSTTRG00000005375
N
0.963
RYBP
Homo sapiens
ENSG00000163602
N
0.963
RYBP
Gallus gallus
ENSGALG00000007790
N
0.963
RYBP
Microcebus murinus
ENSMICG00000014365
N
0.963
RYBP
Monodelphis domestica
ENSMODG00000003921
N
0.963
RYBP
Macaca mulatta
ENSMMUG00000007128
N
0.963
rybpb
Danio rerio
ENSDARG00000053459
N
0.926
RYBP
Vicugna pacos
ENSVPAG00000007715
N
0.926
RYBP
Loxodonta africana
ENSLAFG00000003133
N
0.926
ENSMLUG00000015085
Myotis lucifugus
ENSMLUG00000015085
N
0.926
ENSMUSG00000055763
Mus musculus
ENSMUSG00000055763
N
0.893
rybp
Xenopus tropicalis
ENSXETG00000015914
N
0.889
RYBP
Takifugu rubripes
ENSTRUG00000009347
N
0.889
RYBP
Tetraodon nigroviridis
ENSTNIG00000007355
N
0.889
rybpa
Danio rerio
ENSDARG00000037773
N
0.889
Q5ZKC5_CHICK
Gallus gallus
ENSGALG00000009540
N
0.852
YAF2
Oryzias latipes
ENSORLG00000003255
N
0.852
LOC100410479
Callithrix jacchus
ENSCJAG00000017762
N
0.852
YAF2
Vicugna pacos
ENSVPAG00000012039
N
0.852
YAF2
Choloepus hoffmanni
ENSCHOG00000002266
N
0.852
YAF2
Gorilla gorilla
ENSGGOG00000007230
N
0.852
Ame_R009996
Ailuropoda melanoleuca
Ame_R009996
N
0.852
YAF2
Anolis carolinensis
ENSACAG00000003204
N
0.852
Yaf2
Mus musculus
ENSMUSG00000022634
N
0.852
Q0VC56_BOVIN
Bos taurus
ENSBTAG00000015025
N
0.852
YAF2
Monodelphis domestica
ENSMODG00000008906
N
0.852
ENSPPYG00000004421
Pongo pygmaeus
ENSPPYG00000004421
N
0.852
YAF2
Homo sapiens
ENSG00000015153
N
0.852
RYBP
Gasterosteus aculeatus
ENSGACG00000011809
N
0.852
YAF2
Macropus eugenii
ENSMEUG00000012378
N
0.852
YAF2
Taeniopygia guttata
ENSTGUG00000005817
N
0.852
Yaf2
Rattus norvegicus
ENSRNOG00000004773
N
0.852
YAF2
Macaca mulatta
ENSMMUG00000010868
N
0.852
YAF2
Pteropus vampyrus
ENSPVAG00000016833
N
0.852
YAF2
Pan troglodytes
ENSPTRG00000004837
N
0.852
YAF2
Cavia porcellus
ENSCPOG00000015156
N
0.852
YAF2
Tursiops truncatus
ENSTTRG00000001376
N
0.852
AAI55956
Xenopus laevis
AAI55956
N
0.821
AAI69386
Xenopus laevis
AAI69386
N
0.821
AAI69358
Xenopus laevis
AAI69358
N
0.821
fgenesh2_pg.scaffold_670000003
Branchiostoma floridae
fgenesh2_pg.scaffold_670000003
N
0.815
gw.67.121.1
Branchiostoma floridae
gw.67.121.1
N
0.815
YAF2
Loxodonta africana
ENSLAFG00000014339
N
0.815
AAH73220
Xenopus laevis
AAH73220
N
0.815
YAF2
Gasterosteus aculeatus
ENSGACG00000004103
N
0.815
AAI06269
Xenopus laevis
AAI06269
N
0.815
yaf2
Xenopus tropicalis
ENSXETG00000006795
N
0.815
GI20311
Drosophila mojavensis
FBgn0143047
N
0.786
GM15940
Drosophila sechellia
FBgn0170856
N
0.786
GH19772
Drosophila grimshawi
FBgn0127236
N
0.786
GF11639
Drosophila ananassae
FBgn0088679
N
0.786
RYBP
Drosophila melanogaster
FBgn0034763
N
0.786
GD11693
Drosophila simulans
FBgn0183433
N
0.786
GG22783
Drosophila erecta
FBgn0114948
N
0.786
GE14012
Drosophila yakuba
FBgn0231642
N
0.786
GJ22038
Drosophila virilis
FBgn0209152
N
0.786
GK21447
Drosophila willistoni
FBgn0223439
N
0.786
YAF2
Tetraodon nigroviridis
ENSTNIG00000015988
N
0.778
YAF2
Takifugu rubripes
ENSTRUG00000016786
N
0.778
YAF2
Tetraodon nigroviridis
ENSTNIG00000018505
N
0.778
YAF2
Oryzias latipes
ENSORLG00000013064
N
0.778
YAF2
Spermophilus tridecemlineatus
ENSSTOG00000007224
N
0.778
YAF2
Erinaceus europaeus
ENSEEUG00000004713
N
0.778
YAF2
Oryctolagus cuniculus
ENSOCUG00000007321
N
0.778
YAF2
Takifugu rubripes
ENSTRUG00000016767
N
0.778
GA11466-RA
Drosophila pseudoobscura
FBgn0071517
N
0.750
GL11369
Drosophila persimilis
FBgn0148978
N
0.750
fgenesh1_pg.C_scaffold_97000016
Daphnia pulex
fgenesh1_pg.C_scaffold_97000016
N
0.750
AGAP010288
Anopheles gambiae
AGAP010288
N
0.750
YAF2
Echinops telfairi
ENSETEG00000001634
N
0.750
193935
Helobdella robusta
193935
N
0.741
yaf2
Danio rerio
ENSDARG00000015966
N
0.741