CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pg.C_scaffold_8000400
(
Trichoderma atroviride
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
fgenesh1_pg.C_scaffold_8000400
T27476_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_8000400
RanBP ZF
136
154
ASATWVCNICSFSNPVPSN
fgenesh1_pg.C_scaffold_8000400
RanBP ZF
238
261
QCPRCTFSNHPSLLSCEMCGAPLL
Links
Other
RanBP ZF
family RBPs
Other
Trichoderma atroviride
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.C_scaffold_13000098
Trichoderma virens
fgenesh1_pg.C_scaffold_13000098
N
0.907
e_gw1.3.693.1
Trichoderma reesei
e_gw1.3.693.1
N
0.907
e_gw1.18.954.1
Nectria haematococca
e_gw1.18.954.1
N
0.837
FGSG_05263
Fusarium graminearum
FGSG_05263
N
0.814
FOXG_08443
Fusarium oxysporum
FOXG_08443
N
0.814
UREG_02651
Uncinocarpus reesii
UREG_02651
N
0.791
MCYG_02556
Microsporum canis
MCYG_02556
N
0.791
CPSG_05597
Coccidioides posadasii
CPSG_05597
N
0.791
CIMG_08661
Coccidioides immitis
CIMG_08661
N
0.791
PMAA_085380
Penicillium marneffei
PMAA_085380
N
0.767
estExt_Genewise1.C_30334
Cochliobolus heterostrophus C5
estExt_Genewise1.C_30334
N
0.767
ATEG_02228
Aspergillus terreus
CADATEAG00000017
N
0.767
Pc13g06240
Penicillium chrysogenum
Pc13g06240
N
0.767
An14g00750
Aspergillus niger
CADANGAG00011011
N
0.767
AB01983.1
Alternaria brassicicola
AB01983.1
N
0.767
ACLA_054290
Aspergillus clavatus
CADACLAG00005245
N
0.744
fgenesh1_pm.00795_#_61
Aspergillus carbonarius
fgenesh1_pm.00795_#_61
N
0.744
BDBG_07164
Blastomyces dermatitidis
BDBG_07164
N
0.727
estExt_fgenesh1_pg.C_chr_40551
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_40551
N
0.705