CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIBMGA007567
(
Bombyx mori
)
RanBP ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
IPR001876
BGIBMGA007567
T27693_0.6
SilkDB (2008-Apr-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIBMGA007567
RanBP ZF
3
33
DGDWICSDPSCGNINFARRASCYRCNKDRPD
BGIBMGA007567
RanBP ZF
60
88
ADDWQCNKCANVNWARRQTCNVCNAPKFG
Links
Other
RanBP ZF
family RBPs
Other
Bombyx mori
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm3854
Apis mellifera
amel4_ncbi_hmm3854
N
0.767
amel4_ncbi_hmm3854
Tribolium castaneum
amel4_ncbi_hmm3854
N
0.767
PHUM217580
Pediculus humanus
PHUM217580
N
0.738
gw.348.48.1
Branchiostoma floridae
gw.348.48.1
I
0.721
XP_002165332.1
Hydra magnipapillata
XP_002165332.1
N
0.705