CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BC1G_03224
(
Botrytis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BC1G_03224
T28216_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BC1T_03224
RRM
293
354
VYIRGLHPNTDDETLAQYAARFGKVETSKAIIDTATGACKGFGFAKYFDVRDSEMCIRGFWE
BC1T_03224
RRM
381
448
LYVSNLPKTMTESELGAIFMDYKVSSSRILRDSQNHSRGVGFARFENRDVCEEIIRKFHGQPIGEEGL
Links
Other
RRM
family RBPs
Other
Botrytis cinerea
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SS1G_08605
Sclerotinia sclerotiorum
SS1G_08605
N
0.977
CHGG_04655
Chaetomium globosum
CHGG_04655
N
0.729
fgenesh2_pg.1_#_466
Thielavia terrestris
fgenesh2_pg.1_#_466
N
0.714
fgenesh1_pm.1_#_413
Myceliophthora thermophila
fgenesh1_pm.1_#_413
N
0.714
VDBG_08298
Verticillium albo atrum
VDBG_08298
N
0.714
FOXG_08275
Fusarium oxysporum
FOXG_08275
N
0.714
fgenesh1_pm.C_scaffold_4000255
Neurospora tetrasperma
fgenesh1_pm.C_scaffold_4000255
N
0.709
NCU09742
Neurospora crassa
NCU09742
N
0.709
e_gw1.3.1867.1
Neurospora discreta
e_gw1.3.1867.1
N
0.709
estExt_fgenesh1_pg.C_30620
Cryphonectria parasitica
estExt_fgenesh1_pg.C_30620
N
0.704