CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BC1G_10628
(
Botrytis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BC1G_10628
T28245_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BC1T_10628
RRM
427
481
EIGDECGEKYGRVERVYIDRQSAPAKVFVKFTNQLSALRAVNALEGRIFNGNTIS
Links
Other
RRM
family RBPs
Other
Botrytis cinerea
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SS1G_10570
Sclerotinia sclerotiorum
SS1G_10570
N
1.000
TEQG_06875
Trichophyton equinum
TEQG_06875
N
0.857
TESG_01518
Trichophyton tonsurans
TESG_01518
N
0.857
TERG_04597
Trichophyton rubrum
TERG_04597
N
0.857
MGYG_01864
Microsporum gypseum
MGYG_01864
N
0.857
CPSG_03148
Coccidioides posadasii
CPSG_03148
N
0.839
MCYG_01323
Microsporum canis
MCYG_01323
N
0.839
ATEG_05545
Aspergillus terreus
CADATEAG00004689
N
0.807
AFLA_113070
Aspergillus flavus
CADAFLAG00005041
N
0.807
ANIA_04398
Aspergillus nidulans
CADANIAG00006059
N
0.807
fgenesh1_pg.00609_#_525
Aspergillus carbonarius
fgenesh1_pg.00609_#_525
N
0.807
AO090023000898
Aspergillus oryzae
CADAORAG00007984
N
0.807
NFIA_109400
Neosartorya fischeri
CADNFIAG00009700
N
0.789
ACLA_046120
Aspergillus clavatus
CADACLAG00004343
N
0.789
An04g01360
Aspergillus niger
CADANGAG00003845
N
0.789
AFUA_4G06840
Aspergillus fumigatus
CADAFUAG00007720
N
0.789
PABG_04139
Paracoccidioides brasiliensis
PABG_04139
N
0.750
UREG_05557
Uncinocarpus reesii
UREG_05557
N
0.750
e_gw1.5.1248.1
Nectria haematococca
e_gw1.5.1248.1
N
0.727
PMAA_027430
Penicillium marneffei
PMAA_027430
N
0.714