CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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An04g01360
(
Aspergillus niger
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANGAG00003845
T33548_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANGAP00003756
RRM
477
533
QEIGEECSEKYGRVERVFIPRDSAPPVPVFVKFTNQLSALRAVNALEGRIFSGNAIT
Links
Other
RRM
family RBPs
Other
Aspergillus niger
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.00609_#_525
Aspergillus carbonarius
fgenesh1_pg.00609_#_525
N
0.965
AO090023000898
Aspergillus oryzae
CADAORAG00007984
N
0.895
ACLA_046120
Aspergillus clavatus
CADACLAG00004343
N
0.895
AFLA_113070
Aspergillus flavus
CADAFLAG00005041
N
0.895
AFUA_4G06840
Aspergillus fumigatus
CADAFUAG00007720
N
0.895
NFIA_109400
Neosartorya fischeri
CADNFIAG00009700
N
0.895
ATEG_05545
Aspergillus terreus
CADATEAG00004689
N
0.877
ANIA_04398
Aspergillus nidulans
CADANIAG00006059
N
0.877
CPSG_03148
Coccidioides posadasii
CPSG_03148
N
0.807
SS1G_10570
Sclerotinia sclerotiorum
SS1G_10570
N
0.789
BC1G_10628
Botrytis cinerea
BC1G_10628
N
0.789
MCYG_01323
Microsporum canis
MCYG_01323
N
0.789
TESG_01518
Trichophyton tonsurans
TESG_01518
N
0.772
MGYG_01864
Microsporum gypseum
MGYG_01864
N
0.772
PMAA_027430
Penicillium marneffei
PMAA_027430
N
0.772
TERG_04597
Trichophyton rubrum
TERG_04597
N
0.772
TEQG_06875
Trichophyton equinum
TEQG_06875
N
0.772
UREG_05557
Uncinocarpus reesii
UREG_05557
N
0.754
PABG_04139
Paracoccidioides brasiliensis
PABG_04139
N
0.719