CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSG_03148
(
Coccidioides posadasii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CPSG_03148
T29056_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPSG_03148T0
RRM
467
522
EIGDECGEKYGRVERVFIDRSAKGQVPVFVKFTNQLSALRAVNALEGRIFNGNTIT
Links
Other
RRM
family RBPs
Other
Coccidioides posadasii
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TESG_01518
Trichophyton tonsurans
TESG_01518
N
0.875
TEQG_06875
Trichophyton equinum
TEQG_06875
N
0.875
TERG_04597
Trichophyton rubrum
TERG_04597
N
0.875
MGYG_01864
Microsporum gypseum
MGYG_01864
N
0.875
MCYG_01323
Microsporum canis
MCYG_01323
N
0.857
SS1G_10570
Sclerotinia sclerotiorum
SS1G_10570
N
0.839
BC1G_10628
Botrytis cinerea
BC1G_10628
N
0.839
UREG_05557
Uncinocarpus reesii
UREG_05557
N
0.839
PABG_04139
Paracoccidioides brasiliensis
PABG_04139
N
0.839
NFIA_109400
Neosartorya fischeri
CADNFIAG00009700
N
0.825
fgenesh1_pg.00609_#_525
Aspergillus carbonarius
fgenesh1_pg.00609_#_525
N
0.825
AO090023000898
Aspergillus oryzae
CADAORAG00007984
N
0.825
AFLA_113070
Aspergillus flavus
CADAFLAG00005041
N
0.825
ACLA_046120
Aspergillus clavatus
CADACLAG00004343
N
0.825
AFUA_4G06840
Aspergillus fumigatus
CADAFUAG00007720
N
0.825
An04g01360
Aspergillus niger
CADANGAG00003845
N
0.807
ANIA_04398
Aspergillus nidulans
CADANIAG00006059
N
0.789
ATEG_05545
Aspergillus terreus
CADATEAG00004689
N
0.772
PMAA_027430
Penicillium marneffei
PMAA_027430
N
0.750