CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AFUA_4G06840
(
Aspergillus fumigatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAFUAG00007720
T33521_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00007720
RRM
461
517
QEIGEECSEKYGRVERVFISRESGPPVPVFVKFTNQLSALRAVNALEGRVFNGNTIT
Links
Other
RRM
family RBPs
Other
Aspergillus fumigatus
RBPs
19 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NFIA_109400
Neosartorya fischeri
CADNFIAG00009700
N
1.000
ACLA_046120
Aspergillus clavatus
CADACLAG00004343
N
0.965
ANIA_04398
Aspergillus nidulans
CADANIAG00006059
N
0.930
fgenesh1_pg.00609_#_525
Aspergillus carbonarius
fgenesh1_pg.00609_#_525
N
0.912
An04g01360
Aspergillus niger
CADANGAG00003845
N
0.895
AO090023000898
Aspergillus oryzae
CADAORAG00007984
N
0.877
AFLA_113070
Aspergillus flavus
CADAFLAG00005041
N
0.877
ATEG_05545
Aspergillus terreus
CADATEAG00004689
N
0.860
CPSG_03148
Coccidioides posadasii
CPSG_03148
N
0.825
UREG_05557
Uncinocarpus reesii
UREG_05557
N
0.807
MCYG_01323
Microsporum canis
MCYG_01323
N
0.807
MGYG_01864
Microsporum gypseum
MGYG_01864
N
0.789
BC1G_10628
Botrytis cinerea
BC1G_10628
N
0.789
PMAA_027430
Penicillium marneffei
PMAA_027430
N
0.789
TESG_01518
Trichophyton tonsurans
TESG_01518
N
0.789
TERG_04597
Trichophyton rubrum
TERG_04597
N
0.789
SS1G_10570
Sclerotinia sclerotiorum
SS1G_10570
N
0.789
TEQG_06875
Trichophyton equinum
TEQG_06875
N
0.789
PABG_04139
Paracoccidioides brasiliensis
PABG_04139
N
0.737