CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Bm1_43995
(
Brugia malayi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Bm1_43995
T28408_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bm1_43995
RRM
51
121
LIINYLPQNMTQEEVHALFSTLGEIDSCKLVRDKVTGQSLGYGFVNYVRQEDAYKAVTSLNGLRLQNKTIK
Bm1_43995
RRM
137
205
LYVSGLAKTMSQLDLEALFKPFGQIITSRILSDNVTGISKGVGFVRFDRKSEAEDAIDKLNGKIPAGCT
Bm1_43995
RRM
329
402
IFVYNLPPETEDAVLWQLFGPFGAVLSVKAGIIIKDFSTGKCKGYGFVTMGQYEDAVTAITSLNGTQLGNRTLQ
Links
Other
RRM
family RBPs
Other
Brugia malayi
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOAG_11702
Loa loa
LOAG_11702
N
0.977
nasonia_NCBI_hmm330804
Nasonia vitripennis
nasonia_NCBI_hmm330804
I
0.724
CpipJ_CPIJ016143
Culex pipiens
CpipJ_CPIJ016143
I
0.721
CPIJ016143
Culex quinquefasciatus
CPIJ016143
I
0.721
AGAP000965
Anopheles gambiae
AGAP000965
I
0.715
amel4_ncbi_hmm5219
Apis mellifera
amel4_ncbi_hmm5219
I
0.710
GH13638
Drosophila grimshawi
FBgn0121114
I
0.706
GL26299
Drosophila persimilis
FBgn0163881
I
0.701