CpipJ_CPIJ016143 (Culex pipiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 CpipJ_CPIJ016143 T29005_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.829
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.746
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.746
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.746
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.746
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.746
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016143-RA RRM 29 100
CpipJ_CPIJ016143-RA RRM 116 184
CpipJ_CPIJ016143-RA RRM 258 328

Links

Other RRM family RBPs
Other Culex pipiens RBPs

142 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 1.000
AGAP000965 Anopheles gambiae AGAP000965 I 0.981
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.910
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.910
GL26299 Drosophila persimilis FBgn0163881 I 0.854
GH13638 Drosophila grimshawi FBgn0121114 I 0.849
Rbp9 Drosophila melanogaster FBgn0010263 D 0.849
GG24901 Drosophila erecta FBgn0117030 I 0.834
GM18380 Drosophila sechellia FBgn0173287 I 0.834
GI11879 Drosophila mojavensis FBgn0134637 I 0.834
GF14992 Drosophila ananassae FBgn0092017 I 0.834
GK14865 Drosophila willistoni FBgn0216870 I 0.834
GE18193 Drosophila yakuba FBgn0235624 I 0.834
GJ13991 Drosophila virilis FBgn0201209 I 0.834
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.834
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.831
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.831
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.808
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.807
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.798
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.765
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.759
elavl2 Danio rerio ENSDARG00000040732 I 0.756
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.751
187316 Helobdella robusta 187316 N 0.750
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.750
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.746
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.746
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.746
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.746
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.746
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.746
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.746
AAA96943 Xenopus laevis AAA96943 I 0.746
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.746
Elavl2 Mus musculus ENSMUSG00000008489 I 0.746
Elavl4 Mus musculus ENSMUSG00000028546 I 0.746
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.746
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.746
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.746
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.746
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.746
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.746
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.746
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.746
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.746
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.746
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.746
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.746
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.746
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.746
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.746
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.746
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.746
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.746
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.746
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.746
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.746
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.746
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.746
LOC100051268 Equus caballus ENSECAG00000022284 I 0.746
ELAVL2 Equus caballus ENSECAG00000020142 I 0.746
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.746
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.746
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.746
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.746
ELAVL4 Homo sapiens ENSG00000162374 D 0.746
ELAVL2 Homo sapiens ENSG00000107105 D 0.746
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.746
AAH99348 Xenopus laevis AAH99348 I 0.746
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.746
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.746
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.746
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.746
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.746
CAA59430 Xenopus laevis CAA59430 I 0.746
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.746
AAI70539 Xenopus laevis AAI70539 I 0.746
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.746
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.746
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.746
AAA96945 Xenopus laevis AAA96945 I 0.746
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.746
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.746
CBU92440 Xenopus laevis CBU92440 I 0.746
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.746
Q91903 Xenopus laevis Q91903 I 0.746
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.746
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.746
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.746
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.746
CBF67567 Xenopus laevis CBF67567 I 0.746
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.746
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.746
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.746
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.746
AAH94189 Xenopus laevis AAH94189 I 0.746
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.746
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.745
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.745
elavl3 Danio rerio ENSDARG00000014420 I 0.745
elavl4 Danio rerio ENSDARG00000045639 I 0.744
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.742
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.741
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.741
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.741
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.741
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.741
Elavl3 Mus musculus ENSMUSG00000003410 I 0.741
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.741
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.741
ELAVL3 Homo sapiens ENSG00000196361 I 0.741
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.741
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.741
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.741
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.738
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.737
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.736
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.735
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.732
AAI69769 Xenopus laevis AAI69769 I 0.732
Q91584 Xenopus laevis Q91584 I 0.732
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.732
AAA96944 Xenopus laevis AAA96944 I 0.732
LOAG_11702 Loa loa LOAG_11702 N 0.731
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.729
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.728
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.728
185541 Helobdella robusta 185541 I 0.726
AGAP001883 Anopheles gambiae AGAP001883 N 0.723
Bm1_43995 Brugia malayi Bm1_43995 N 0.721
GM19036 Drosophila sechellia FBgn0173939 N 0.721
GG12756 Drosophila erecta FBgn0105043 N 0.721
GD16475 Drosophila simulans FBgn0188089 N 0.721
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.717
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.717
ISCW010302 Ixodes scapularis ISCW010302 N 0.712
AAEL008164 Aedes aegypti AAEL008164 N 0.709
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.708
CpipJ_CPIJ008385 Culex pipiens CpipJ_CPIJ008385 N 0.705
CPIJ008385 Culex quinquefasciatus CPIJ008385 N 0.705
hug Danio rerio ENSDARG00000016405 I 0.703