GH13638 (Drosophila grimshawi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0121114 T43462_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Rbp9
M124_0.6 		Drosophila melanogaster UUDDGUU RNAcompete
Ray et al.(2013)
RNCMPT00132 		0.968
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.741
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.741
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.741
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.731
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.731
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.731
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.701
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.701
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.701
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.701
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.701
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0147544 RRM 115 185
FBpp0147544 RRM 201 269
FBpp0147544 RRM 361 431

Links

Other RRM family RBPs
Other Drosophila grimshawi RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL26299 Drosophila persimilis FBgn0163881 I 0.995
Rbp9 Drosophila melanogaster FBgn0010263 D 0.991
GE18193 Drosophila yakuba FBgn0235624 I 0.972
GI11879 Drosophila mojavensis FBgn0134637 I 0.972
GK14865 Drosophila willistoni FBgn0216870 I 0.972
GA28809-RA Drosophila pseudoobscura FBgn0250168 I 0.972
GJ13991 Drosophila virilis FBgn0201209 I 0.972
GG24901 Drosophila erecta FBgn0117030 I 0.972
GM18380 Drosophila sechellia FBgn0173287 I 0.972
GF14992 Drosophila ananassae FBgn0092017 I 0.972
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.905
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.896
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.849
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.849
AGAP000965 Anopheles gambiae AGAP000965 I 0.848
CPIJ000395 Culex quinquefasciatus CPIJ000395 I 0.839
CpipJ_CPIJ000395 Culex pipiens CpipJ_CPIJ000395 I 0.839
fgenesh1_pg.C_scaffold_8000205 Daphnia pulex fgenesh1_pg.C_scaffold_8000205 I 0.802
fgenesh2_pg.C_sca_14000012 Lottia gigantea fgenesh2_pg.C_sca_14000012 I 0.801
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.788
estExt_Genewise1Plus.C_1660036 Capitella teleta estExt_Genewise1Plus.C_1660036 I 0.788
elavl2 Danio rerio ENSDARG00000040732 I 0.745
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.741
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.741
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.741
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.741
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.741
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.741
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.741
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.741
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.741
ELAVL4 Homo sapiens ENSG00000162374 D 0.741
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.741
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.741
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.741
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.741
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.741
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.741
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.741
Elavl4 Mus musculus ENSMUSG00000028546 I 0.741
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.741
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.741
LOC100051268 Equus caballus ENSECAG00000022284 I 0.741
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.741
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.741
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.741
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.741
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.741
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.741
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.741
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.741
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.741
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.741
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.741
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.739
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.737
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.736
AAH99348 Xenopus laevis AAH99348 I 0.736
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.736
AAA96945 Xenopus laevis AAA96945 I 0.736
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.736
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.736
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.736
CBU92440 Xenopus laevis CBU92440 I 0.736
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.736
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.736
CBF67567 Xenopus laevis CBF67567 I 0.736
elavl4 Danio rerio ENSDARG00000045639 I 0.734
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.731
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.731
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.731
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.731
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.731
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.731
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.731
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.731
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.731
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.731
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.731
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.731
Elavl2 Mus musculus ENSMUSG00000008489 I 0.731
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.731
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.731
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.731
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.731
ELAVL2 Equus caballus ENSECAG00000020142 I 0.731
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.731
ELAVL2 Homo sapiens ENSG00000107105 D 0.731
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.731
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.731
AAH94189 Xenopus laevis AAH94189 I 0.731
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.731
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.731
AAI70539 Xenopus laevis AAI70539 I 0.731
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.731
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.731
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.731
Q91903 Xenopus laevis Q91903 I 0.728
AAA96943 Xenopus laevis AAA96943 I 0.728
elavl3 Danio rerio ENSDARG00000014420 I 0.726
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.726
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.726
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.726
187316 Helobdella robusta 187316 N 0.725
CAA59430 Xenopus laevis CAA59430 I 0.723
GM19036 Drosophila sechellia FBgn0173939 N 0.721
GG12756 Drosophila erecta FBgn0105043 N 0.721
GD16475 Drosophila simulans FBgn0188089 N 0.721
185541 Helobdella robusta 185541 I 0.720
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.720
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.717
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.717
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.717
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.717
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.717
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.717
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.717
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.717
ELAVL3 Homo sapiens ENSG00000196361 I 0.717
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.717
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.717
Elavl3 Mus musculus ENSMUSG00000003410 I 0.717
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.717
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.717
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.716
LOAG_11702 Loa loa LOAG_11702 N 0.711
Q91584 Xenopus laevis Q91584 I 0.709
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.709
AAI69769 Xenopus laevis AAI69769 I 0.709
AAA96944 Xenopus laevis AAA96944 I 0.709
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.709
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.706
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.706
Bm1_43995 Brugia malayi Bm1_43995 N 0.706
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.706
AGAP001883 Anopheles gambiae AGAP001883 N 0.705
ELAVL1 Homo sapiens ENSG00000066044 D 0.701
ELAVL1 Felis catus ENSFCAG00000014947 I 0.701
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.701
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.701
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.701
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.701
ISCW010302 Ixodes scapularis ISCW010302 N 0.701
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.701
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.701
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.701
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.701
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.701
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.701
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.701
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.701
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.701
AAA96942 Xenopus laevis AAA96942 I 0.701
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.701
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.701
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.701
AAEL008164 Aedes aegypti AAEL008164 N 0.700