CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FGSG_00370
(
Fusarium graminearum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FGSG_00370
T29211_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FGSG_00370T0
RRM
10
80
VFVGNIPYGLTEEQITEIFSSAGKVERFRLVYDSETGRPKGFGFADYPDTDSASSAVRNLNDHEIMGRKLR
Links
Other
RRM
family RBPs
Other
Fusarium graminearum
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.sca_1_chr1_3_0000632
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000632
N
0.986
FVEG_00825
Fusarium verticillioides
FVEG_00825
N
0.958
FOXG_00686
Fusarium oxysporum
FOXG_00686
N
0.958
e_gw1.1.4045.1
Trichoderma atroviride
e_gw1.1.4045.1
N
0.944
e_gw1.7.1285.1
Trichoderma virens
e_gw1.7.1285.1
N
0.944
e_gw1.4.400.1
Trichoderma reesei
e_gw1.4.400.1
N
0.944
NCU03311
Neurospora crassa
NCU03311
N
0.873
estExt_Genewise1Plus.C_50197
Neurospora tetrasperma
estExt_Genewise1Plus.C_50197
N
0.873
estExt_fgenesh3_kg.C_70160
Neurospora discreta
estExt_fgenesh3_kg.C_70160
N
0.873
estExt_Genewise1Plus.C_20994
Myceliophthora thermophila
estExt_Genewise1Plus.C_20994
N
0.859
VDAG_04254
Verticillium dahliae
VDAG_04254
N
0.859
CHGG_01583
Chaetomium globosum
CHGG_01583
N
0.859
e_gw1.6.1433.1
Cryphonectria parasitica
e_gw1.6.1433.1
N
0.859
GLRG_10397
Colletotrichum graminicola
GLRG_10397
N
0.859
BC1G_15665
Botrytis cinerea
BC1G_15665
N
0.845
e_gw1.4.931.1
Thielavia terrestris
e_gw1.4.931.1
N
0.845
MGG_09885
Magnaporthe oryzae
MGG_09885
N
0.845
SS1G_09907
Sclerotinia sclerotiorum
SS1G_09907
N
0.845
GSTUMT00004863001
Tuber melanosporum
GSTUMT00004863001
N
0.803
Pa_1_6970
Podospora anserina
Pa_1_6970
N
0.761
EAT89416.2
Phaeosphaeria nodorum
EAT89416.2
N
0.732
SNOG_02685
Stagonospora nodorum
SNOG_02685
N
0.732
UREG_00968
Uncinocarpus reesii
UREG_00968
N
0.704