CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MCYG_05162
(
Microsporum canis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MCYG_05162
T29709_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MCYG_05162T0
RRM
17
88
VYVRNLEERIKIEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDEVNGFELFEKPMV
MCYG_05162T0
RRM
183
246
LFLRELPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMALGENE
Links
Other
RRM
family RBPs
Other
Microsporum canis
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MGYG_06202
Microsporum gypseum
MGYG_06202
N
0.985
TEQG_04632
Trichophyton equinum
TEQG_04632
N
0.978
TRV_03163
Trichophyton verrucosum
TRV_03163
N
0.978
TERG_06343
Trichophyton rubrum
TERG_06343
N
0.971
ARB_04373
Arthroderma benhamiae
ARB_04373
N
0.971
TESG_03846
Trichophyton tonsurans
TESG_03846
N
0.971
CIMG_09202
Coccidioides immitis
CIMG_09202
N
0.890
CPSG_03752
Coccidioides posadasii
CPSG_03752
N
0.890
BDBG_07806
Blastomyces dermatitidis
BDBG_07806
I
0.839
UREG_05248
Uncinocarpus reesii
UREG_05248
N
0.838
HCAG_02639
Histoplasma capsulatum
HCAG_02639
N
0.832
PABG_04932
Paracoccidioides brasiliensis
PABG_04932
N
0.825
ANIA_00109
Aspergillus nidulans
CADANIAG00002640
N
0.819
ATEG_02080
Aspergillus terreus
CADATEAG00007708
N
0.809
NFIA_075370
Neosartorya fischeri
CADNFIAG00007887
N
0.803
ACLA_014960
Aspergillus clavatus
CADACLAG00001282
N
0.801
PMAA_031140
Penicillium marneffei
PMAA_031140
N
0.801
An18g02460
Aspergillus niger
CADANGAG00013880
N
0.794
AFUA_5G11930
Aspergillus fumigatus
CADAFUAG00006332
N
0.788
e_gw1.00129.522.1
Aspergillus carbonarius
e_gw1.00129.522.1
N
0.787
Pc21g07040
Penicillium chrysogenum
Pc21g07040
N
0.779
AO090120000314
Aspergillus oryzae
CADAORAG00011453
N
0.765
VDAG_10424
Verticillium dahliae
VDAG_10424
I
0.701