CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABG_04932
(
Paracoccidioides brasiliensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PABG_04932
T29952_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PABG_04932T0
RRM
1250
1319
VQNLEERIKVEPLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSATRAIEEINGFELFEKPMV
PABG_04932T0
RRM
1411
1475
LFLREIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGM
Links
Other
RRM
family RBPs
Other
Paracoccidioides brasiliensis
RBPs
24 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_07806
Blastomyces dermatitidis
BDBG_07806
I
0.949
HCAG_02639
Histoplasma capsulatum
HCAG_02639
N
0.942
CIMG_09202
Coccidioides immitis
CIMG_09202
N
0.869
CPSG_03752
Coccidioides posadasii
CPSG_03752
N
0.869
UREG_05248
Uncinocarpus reesii
UREG_05248
N
0.859
TEQG_04632
Trichophyton equinum
TEQG_04632
N
0.847
TESG_03846
Trichophyton tonsurans
TESG_03846
N
0.847
TRV_03163
Trichophyton verrucosum
TRV_03163
N
0.846
ATEG_02080
Aspergillus terreus
CADATEAG00007708
N
0.844
ARB_04373
Arthroderma benhamiae
ARB_04373
N
0.839
MCYG_05162
Microsporum canis
MCYG_05162
N
0.825
TERG_06343
Trichophyton rubrum
TERG_06343
N
0.825
ACLA_014960
Aspergillus clavatus
CADACLAG00001282
N
0.822
MGYG_06202
Microsporum gypseum
MGYG_06202
N
0.810
AO090120000314
Aspergillus oryzae
CADAORAG00011453
N
0.807
AFUA_5G11930
Aspergillus fumigatus
CADAFUAG00006332
N
0.807
An18g02460
Aspergillus niger
CADANGAG00013880
N
0.800
NFIA_075370
Neosartorya fischeri
CADNFIAG00007887
N
0.796
ANIA_00109
Aspergillus nidulans
CADANIAG00002640
N
0.790
e_gw1.00129.522.1
Aspergillus carbonarius
e_gw1.00129.522.1
N
0.788
Pc21g07040
Penicillium chrysogenum
Pc21g07040
N
0.788
PMAA_031140
Penicillium marneffei
PMAA_031140
N
0.765
estExt_Genewise1Plus.C_11381
Myceliophthora thermophila
estExt_Genewise1Plus.C_11381
I
0.708
CHGG_04587
Chaetomium globosum
CHGG_04587
I
0.701