CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ANIA_00109
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00002640
T33610_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00002640
RRM
16
87
VYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDNVDSATRAIDEVNGFDLFDKPMV
CADANIAP00002640
RRM
179
244
LFLRELPDTADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGPEGKP
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_014960
Aspergillus clavatus
CADACLAG00001282
N
0.899
ATEG_02080
Aspergillus terreus
CADATEAG00007708
N
0.877
NFIA_075370
Neosartorya fischeri
CADNFIAG00007887
N
0.862
AFUA_5G11930
Aspergillus fumigatus
CADAFUAG00006332
N
0.855
An18g02460
Aspergillus niger
CADANGAG00013880
N
0.855
e_gw1.00129.522.1
Aspergillus carbonarius
e_gw1.00129.522.1
N
0.833
AO090120000314
Aspergillus oryzae
CADAORAG00011453
N
0.826
PMAA_031140
Penicillium marneffei
PMAA_031140
N
0.826
MCYG_05162
Microsporum canis
MCYG_05162
N
0.819
MGYG_06202
Microsporum gypseum
MGYG_06202
N
0.819
Pc21g07040
Penicillium chrysogenum
Pc21g07040
N
0.819
TRV_03163
Trichophyton verrucosum
TRV_03163
N
0.819
TEQG_04632
Trichophyton equinum
TEQG_04632
N
0.819
TESG_03846
Trichophyton tonsurans
TESG_03846
N
0.812
TERG_06343
Trichophyton rubrum
TERG_06343
N
0.812
CIMG_09202
Coccidioides immitis
CIMG_09202
N
0.812
ARB_04373
Arthroderma benhamiae
ARB_04373
N
0.812
CPSG_03752
Coccidioides posadasii
CPSG_03752
N
0.812
HCAG_02639
Histoplasma capsulatum
HCAG_02639
N
0.804
BDBG_07806
Blastomyces dermatitidis
BDBG_07806
I
0.804
UREG_05248
Uncinocarpus reesii
UREG_05248
N
0.797
PABG_04932
Paracoccidioides brasiliensis
PABG_04932
N
0.790