CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.1.892.1
(
Trichoplax adhaerens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.1.892.1
T53150_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.1.892.1
RRM
27
97
LFCGDLGNEVTEELLTRIFSRYSSLQNVKVVRDKRSNKSKGYGFLSFKDSKDYLRAMKEMNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Trichoplax adhaerens
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.718
CJA09414
Caenorhabditis japonica
CJA09414
I
0.718
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.718
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.718
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.704
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.704
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.704
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.704
RO3G_12779
Rhizopus oryzae
RO3G_12779
N
0.704
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.704
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.704
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.704
CRE29329
Caenorhabditis remanei
CRE29329
I
0.704
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.704
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.704
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.704