CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm13002
(
Apis mellifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm13002
T31843_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm13002
RRM
61
130
LFVGGLSRNTTDKELRDHFSKFGEIESISVKIDPYTGISRGFAFMVFTNPKTIDKLLASGEHYINKRKVD
amel4_ncbi_hmm13002
RRM
143
212
IFVGGLTPEITDEDIKTYFGQYGTIVELQAPFDKVKNQRKGFCFITFDSKEVVYKLLKTPKQTINGKEVD
Links
Other
RRM
family RBPs
Other
Apis mellifera
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm314274
Nasonia vitripennis
nasonia_NCBI_hmm314274
N
0.821
GE24428
Drosophila yakuba
FBgn0241545
N
0.750
GF17370
Drosophila ananassae
FBgn0094388
N
0.743
sqd
Drosophila melanogaster
FBgn0086897
N
0.743
GG17035
Drosophila erecta
FBgn0109263
N
0.743
GA14206-RA
Drosophila pseudoobscura
FBgn0074235
N
0.743
GM25920
Drosophila sechellia
FBgn0180776
N
0.736
GD20486
Drosophila simulans
FBgn0191957
N
0.729
GI10695
Drosophila mojavensis
FBgn0133459
N
0.729
GH19060
Drosophila grimshawi
FBgn0126527
N
0.729
GK13337
Drosophila willistoni
FBgn0215346
N
0.721
GJ23113
Drosophila virilis
FBgn0210215
N
0.721
AAEL005515
Aedes aegypti
AAEL005515
N
0.707
AGAP000399
Anopheles gambiae
AGAP000399
N
0.707
amel4_ncbi_hmm2459
Apis mellifera
amel4_ncbi_hmm2459
N
0.700