CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GI10695
(
Drosophila mojavensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0133459
T43563_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0159912
RRM
59
128
LFVGGLSWETTEKELRDHFGKFGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDQVSAAEEHIINSKKVD
FBpp0159912
RRM
139
208
IFVGGLTTEISDEEIKTYFSQFGNIVEVEMPFDKQKSHRKGFCFITFDSEQVVTDLLKTPKQKISGKEVD
Links
Other
RRM
family RBPs
Other
Drosophila mojavensis
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GJ23113
Drosophila virilis
FBgn0210215
N
0.993
GH19060
Drosophila grimshawi
FBgn0126527
N
0.979
GA14206-RA
Drosophila pseudoobscura
FBgn0074235
N
0.971
sqd
Drosophila melanogaster
FBgn0086897
N
0.957
GG17035
Drosophila erecta
FBgn0109263
N
0.957
GM25920
Drosophila sechellia
FBgn0180776
N
0.950
GF17370
Drosophila ananassae
FBgn0094388
N
0.950
GE24428
Drosophila yakuba
FBgn0241545
N
0.943
GD20486
Drosophila simulans
FBgn0191957
N
0.943
GK13337
Drosophila willistoni
FBgn0215346
N
0.936
GL23974
Drosophila persimilis
FBgn0161564
N
0.914
AAEL005515
Aedes aegypti
AAEL005515
N
0.814
CPIJ011536
Culex quinquefasciatus
CPIJ011536
N
0.793
CpipJ_CPIJ011536
Culex pipiens
CpipJ_CPIJ011536
N
0.793
AGAP000399
Anopheles gambiae
AGAP000399
N
0.793
BGIBMGA013464
Bombyx mori
BGIBMGA013464
N
0.786
amel4_ncbi_hmm2459
Apis mellifera
amel4_ncbi_hmm2459
N
0.771
AGAP006668
Anopheles gambiae
AGAP006668
N
0.771
nasonia_NCBI_hmm138813
Nasonia vitripennis
nasonia_NCBI_hmm138813
N
0.757
AAEL005049
Aedes aegypti
AAEL005049
N
0.743
amel4_ncbi_hmm13002
Apis mellifera
amel4_ncbi_hmm13002
N
0.729
PHUM596900
Pediculus humanus
PHUM596900
N
0.700
estExt_fgenesh1_pm.C_1020006
Daphnia pulex
estExt_fgenesh1_pm.C_1020006
N
0.700