CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
amel4_ncbi_hmm2459
(
Apis mellifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm2459
T31890_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm2459
RRM
56
125
LFVGGLSWETTDKELRDHFGTYGDIESINVKTDPNTGRSRGFAFIVFAKAESLDKIMAAGDHVINNKKVD
amel4_ncbi_hmm2459
RRM
136
205
IFVGGLSTELSDDDIKNFFSQFGTIVEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPKQTINGKEVD
Links
Other
RRM
family RBPs
Other
Apis mellifera
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm138813
Nasonia vitripennis
nasonia_NCBI_hmm138813
N
0.914
BGIBMGA013464
Bombyx mori
BGIBMGA013464
N
0.871
CPIJ011536
Culex quinquefasciatus
CPIJ011536
N
0.850
CpipJ_CPIJ011536
Culex pipiens
CpipJ_CPIJ011536
N
0.850
AAEL005515
Aedes aegypti
AAEL005515
N
0.843
AGAP000399
Anopheles gambiae
AGAP000399
N
0.814
AGAP006668
Anopheles gambiae
AGAP006668
N
0.800
GG17035
Drosophila erecta
FBgn0109263
N
0.786
GH19060
Drosophila grimshawi
FBgn0126527
N
0.786
GA14206-RA
Drosophila pseudoobscura
FBgn0074235
N
0.786
sqd
Drosophila melanogaster
FBgn0086897
N
0.786
GK13337
Drosophila willistoni
FBgn0215346
N
0.786
GE24428
Drosophila yakuba
FBgn0241545
N
0.771
GI10695
Drosophila mojavensis
FBgn0133459
N
0.771
GM25920
Drosophila sechellia
FBgn0180776
N
0.771
GF17370
Drosophila ananassae
FBgn0094388
N
0.764
GJ23113
Drosophila virilis
FBgn0210215
N
0.764
GD20486
Drosophila simulans
FBgn0191957
N
0.764
PHUM596900
Pediculus humanus
PHUM596900
N
0.757
AAEL005049
Aedes aegypti
AAEL005049
N
0.729
GL23974
Drosophila persimilis
FBgn0161564
N
0.729
estExt_fgenesh1_pm.C_1020006
Daphnia pulex
estExt_fgenesh1_pm.C_1020006
N
0.707
amel4_ncbi_hmm13002
Apis mellifera
amel4_ncbi_hmm13002
N
0.700