CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GK13337
(
Drosophila willistoni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0215346
T44165_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0242480
RRM
68
137
LFVGGLSWETTEKELRDHFGKFGDIDSINVKTDPQTGRSRGFAFIVFTNTEAIDKVSSAEEHVINGKKVD
FBpp0242480
RRM
148
217
IFVGGLTTEISDEEIRTYFSQFGTIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKISGKEVD
Links
Other
RRM
family RBPs
Other
Drosophila willistoni
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GA14206-RA
Drosophila pseudoobscura
FBgn0074235
N
0.950
GI10695
Drosophila mojavensis
FBgn0133459
N
0.936
GJ23113
Drosophila virilis
FBgn0210215
N
0.929
GH19060
Drosophila grimshawi
FBgn0126527
N
0.929
sqd
Drosophila melanogaster
FBgn0086897
N
0.921
GG17035
Drosophila erecta
FBgn0109263
N
0.921
GF17370
Drosophila ananassae
FBgn0094388
N
0.914
GM25920
Drosophila sechellia
FBgn0180776
N
0.914
GD20486
Drosophila simulans
FBgn0191957
N
0.907
GE24428
Drosophila yakuba
FBgn0241545
N
0.907
GL23974
Drosophila persimilis
FBgn0161564
N
0.900
AAEL005515
Aedes aegypti
AAEL005515
N
0.800
CpipJ_CPIJ011536
Culex pipiens
CpipJ_CPIJ011536
N
0.793
CPIJ011536
Culex quinquefasciatus
CPIJ011536
N
0.793
AGAP000399
Anopheles gambiae
AGAP000399
N
0.793
BGIBMGA013464
Bombyx mori
BGIBMGA013464
N
0.793
amel4_ncbi_hmm2459
Apis mellifera
amel4_ncbi_hmm2459
N
0.786
AGAP006668
Anopheles gambiae
AGAP006668
N
0.771
nasonia_NCBI_hmm138813
Nasonia vitripennis
nasonia_NCBI_hmm138813
N
0.757
AAEL005049
Aedes aegypti
AAEL005049
N
0.729
amel4_ncbi_hmm13002
Apis mellifera
amel4_ncbi_hmm13002
N
0.721
PHUM596900
Pediculus humanus
PHUM596900
N
0.700
estExt_fgenesh1_pm.C_1020006
Daphnia pulex
estExt_fgenesh1_pm.C_1020006
N
0.700