PASA_GEN_1900109 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PASA_GEN_1900109 T53854_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PASA_GEN_1900109 RRM 37 93
PASA_GEN_1900109 RRM 170 236
PASA_GEN_1900109 RRM 348 414
PASA_GEN_1900109 RRM 465 529

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL013723 Aedes aegypti AAEL013723 N 0.775
AGAP003945 Anopheles gambiae AGAP003945 N 0.763
nasonia_NCBI_hmm329034 Nasonia vitripennis nasonia_NCBI_hmm329034 N 0.760
DGIL_AUG5s17283g3t1 Acyrtosiphon pisum DGIL_AUG5s17283g3t1 N 0.759
GH17472 Drosophila grimshawi FBgn0124942 N 0.747
GI22798 Drosophila mojavensis FBgn0145525 N 0.744
GD16206 Drosophila simulans FBgn0187834 N 0.740
GJ22800 Drosophila virilis FBgn0209904 N 0.740
GM16408 Drosophila sechellia FBgn0171323 N 0.740
GK10936 Drosophila willistoni FBgn0212947 N 0.739
GE23291 Drosophila yakuba FBgn0240488 N 0.736
heph Drosophila melanogaster FBgn0011224 N 0.736
GG11844 Drosophila erecta FBgn0104139 N 0.735
ISCW018130 Ixodes scapularis ISCW018130 N 0.730
GA15927-RA Drosophila pseudoobscura FBgn0075943 N 0.729