U1-70K (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT3G50670-TAIR-G T32757_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G50670.1-P RRM 140 210
AT3G50670.2-P RRM 140 176

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877713.1 Arabidopsis lyrata fgenesh2_kg.5__1406__AT3G50670.1 N 1.000
Cucsa.127380 Cucumis sativus Cucsa.127380 I 0.845
29634.m002163 Ricinus communis 29634.m002163 N 0.831
chr4.CM0165.550.nd Lotus japonicus chr4.CM0165.550.nd N 0.817
Glyma01g38120.1 Glycine max Glyma01g38120.1 N 0.817
Medtr8g093540 Medicago truncatula Medtr8g093540 N 0.803
A9PI24_POPTR Populus trichocarpa POPTR_0005s12580 I 0.803
LOC_Os10g02630 Oryza sativa LOC_Os10g02630 N 0.803
MDP0000744216 Malus x domestica MDP0000744216 N 0.803
ppa004309m Prunus persica ppa004309m N 0.803
GSVIVG00018981001 Vitis vinifera GSVIVG00018981001 N 0.803
Glyma11g07200.1 Glycine max Glyma11g07200.1 N 0.803
B9HEV8_POPTR Populus trichocarpa POPTR_0007s12690 I 0.803
BRADI3G21360 Brachypodium distachyon BRADI3G21360 N 0.803
GRMZM2G113592 Zea mays GRMZM2G113592 N 0.775
SB01G039540 Sorghum bicolor Sb01g039540 N 0.775
BRADI3G30430 Brachypodium distachyon BRADI3G30430 N 0.761
MDP0000261705 Malus x domestica MDP0000261705 N 0.750
SB01G026920 Sorghum bicolor Sb01g026920 N 0.746
EFA83976.1 Polysphondylium pallidum EFA83976.1 I 0.732