A9PI24_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0005s12580 T45512_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRNP70
M068_0.6 		Homo sapiens RWUCAAG RNAcompete
Ray et al.(2013)
RNCMPT00070 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s12580.1 RRM 140 210
POPTR_0005s12580.2 RRM 1 42
POPTR_0005s12580.3 RRM 1 42
POPTR_0005s12580.4 RRM 81 151

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

44 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9HEV8_POPTR Populus trichocarpa POPTR_0007s12690 I 0.901
29634.m002163 Ricinus communis 29634.m002163 N 0.873
Glyma01g38120.1 Glycine max Glyma01g38120.1 N 0.845
Glyma11g07200.1 Glycine max Glyma11g07200.1 N 0.845
GSVIVG00018981001 Vitis vinifera GSVIVG00018981001 N 0.831
Cucsa.127380 Cucumis sativus Cucsa.127380 I 0.831
MDP0000744216 Malus x domestica MDP0000744216 N 0.831
chr4.CM0165.550.nd Lotus japonicus chr4.CM0165.550.nd N 0.831
Medtr8g093540 Medicago truncatula Medtr8g093540 N 0.817
XM_002877713.1 Arabidopsis lyrata fgenesh2_kg.5__1406__AT3G50670.1 N 0.803
U1-70K Arabidopsis thaliana AT3G50670-TAIR-G N 0.803
BRADI3G21360 Brachypodium distachyon BRADI3G21360 N 0.789
ppa004309m Prunus persica ppa004309m N 0.789
LOC_Os10g02630 Oryza sativa LOC_Os10g02630 N 0.789
MDP0000261705 Malus x domestica MDP0000261705 N 0.776
SB01G039540 Sorghum bicolor Sb01g039540 N 0.761
BRADI3G30430 Brachypodium distachyon BRADI3G30430 N 0.761
GRMZM2G113592 Zea mays GRMZM2G113592 N 0.761
PK27789.1 Cannabis sativa PK27789.1 N 0.750
SB01G026920 Sorghum bicolor Sb01g026920 N 0.746
ENSPPYG00000010234 Pongo pygmaeus ENSPPYG00000010234 I 0.718
SNRNP70 Oryctolagus cuniculus ENSOCUG00000015081 I 0.718
SNRNP70 Ornithorhynchus anatinus ENSOANG00000005213 I 0.718
Snrnp70 Mus musculus ENSMUSG00000063511 I 0.718
SNRNP70 Pan troglodytes ENSPTRG00000011277 I 0.718
snrnp70 Xenopus tropicalis ENSXETG00000022919 I 0.718
SNRNP70 Macaca mulatta ENSMMUG00000004928 I 0.718
SNRNP70 Tursiops truncatus ENSTTRG00000017099 I 0.718
SNRNP70 Spermophilus tridecemlineatus ENSSTOG00000013988 I 0.718
Snrnp70 Rattus norvegicus ENSRNOG00000020763 I 0.718
RU17_BOVIN Bos taurus ENSBTAG00000001996 I 0.718
LOC100392779 Callithrix jacchus ENSCJAG00000000193 I 0.718
SNRNP70 Canis familiaris ENSCAFG00000003711 I 0.718
SNRNP70 Anolis carolinensis ENSACAG00000013276 I 0.718
Ame_R005855 Ailuropoda melanoleuca Ame_R005855 I 0.718
SNRNP70 Cavia porcellus ENSCPOG00000019589 I 0.718
Snrnp70 Dipodomys ordii ENSDORG00000010228 I 0.718
SNRNP70 Loxodonta africana ENSLAFG00000028536 I 0.718
SNRNP70 Gorilla gorilla ENSGGOG00000008245 I 0.718
SNRNP70 Homo sapiens ENSG00000104852 D 0.718
SNRNP70 Myotis lucifugus ENSMLUG00000011766 I 0.718
SNRNP70 Erinaceus europaeus ENSEEUG00000005666 I 0.718
estExt_Genewise1.C_470255 Selaginella moellendorfii estExt_Genewise1.C_470255 N 0.714