B9HEV8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0007s12690 T45548_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRNP70
M068_0.6 		Homo sapiens RWUCAAG RNAcompete
Ray et al.(2013)
RNCMPT00070 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0007s12690.1 RRM 140 210

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma01g38120.1 Glycine max Glyma01g38120.1 N 0.915
Glyma11g07200.1 Glycine max Glyma11g07200.1 N 0.901
29634.m002163 Ricinus communis 29634.m002163 N 0.901
A9PI24_POPTR Populus trichocarpa POPTR_0005s12580 I 0.901
GSVIVG00018981001 Vitis vinifera GSVIVG00018981001 N 0.873
MDP0000744216 Malus x domestica MDP0000744216 N 0.873
chr4.CM0165.550.nd Lotus japonicus chr4.CM0165.550.nd N 0.873
Cucsa.127380 Cucumis sativus Cucsa.127380 I 0.873
Medtr8g093540 Medicago truncatula Medtr8g093540 N 0.859
LOC_Os10g02630 Oryza sativa LOC_Os10g02630 N 0.845
BRADI3G21360 Brachypodium distachyon BRADI3G21360 N 0.845
ppa004309m Prunus persica ppa004309m N 0.831
GRMZM2G113592 Zea mays GRMZM2G113592 N 0.817
SB01G039540 Sorghum bicolor Sb01g039540 N 0.817
MDP0000261705 Malus x domestica MDP0000261705 N 0.816
XM_002877713.1 Arabidopsis lyrata fgenesh2_kg.5__1406__AT3G50670.1 N 0.803
U1-70K Arabidopsis thaliana AT3G50670-TAIR-G N 0.803
SB01G026920 Sorghum bicolor Sb01g026920 N 0.789
BRADI3G30430 Brachypodium distachyon BRADI3G30430 N 0.789
BGIOSIBCE031073 Oryza indica BGIOSIBCE031073 N 0.714
SNRNP70 Pan troglodytes ENSPTRG00000011277 I 0.704
ENSPPYG00000010234 Pongo pygmaeus ENSPPYG00000010234 I 0.704
SNRNP70 Oryctolagus cuniculus ENSOCUG00000015081 I 0.704
SNRNP70 Ornithorhynchus anatinus ENSOANG00000005213 I 0.704
Snrnp70 Rattus norvegicus ENSRNOG00000020763 I 0.704
SNRNP70 Spermophilus tridecemlineatus ENSSTOG00000013988 I 0.704
SNRNP70 Tursiops truncatus ENSTTRG00000017099 I 0.704
Snrnp70 Mus musculus ENSMUSG00000063511 I 0.704
SNRNP70 Takifugu rubripes ENSTRUG00000009202 I 0.704
snrnp70 Xenopus tropicalis ENSXETG00000022919 I 0.704
snrnp70 Danio rerio ENSDARG00000077126 I 0.704
LOC100392779 Callithrix jacchus ENSCJAG00000000193 I 0.704
SNRNP70 Cavia porcellus ENSCPOG00000019589 I 0.704
SNRNP70 Canis familiaris ENSCAFG00000003711 I 0.704
RU17_BOVIN Bos taurus ENSBTAG00000001996 I 0.704
Ame_R005855 Ailuropoda melanoleuca Ame_R005855 I 0.704
SNRNP70 Anolis carolinensis ENSACAG00000013276 I 0.704
Snrnp70 Dipodomys ordii ENSDORG00000010228 I 0.704
SNRNP70 Erinaceus europaeus ENSEEUG00000005666 I 0.704
SNRNP70 Loxodonta africana ENSLAFG00000028536 I 0.704
SNRNP70 Myotis lucifugus ENSMLUG00000011766 I 0.704
SNRNP70 Gorilla gorilla ENSGGOG00000008245 I 0.704
SNRNP70 Gasterosteus aculeatus ENSGACG00000000448 I 0.704
SNRNP70 Homo sapiens ENSG00000104852 D 0.704
SNRNP70 Macaca mulatta ENSMMUG00000004928 I 0.704