CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE009857
(
Oryza indica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BGIOSIBCE009857
T32930_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE009857
RRM
18
88
LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTYNGTQMPGTEHT
BGIOSIBCE009857
RRM
111
182
IFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMR
BGIOSIBCE009857
RRM
246
268
PLASAEEAVQRLHGTTIGQQVVR
Links
Other
RRM
family RBPs
Other
Oryza indica
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os03g07800
Oryza sativa
LOC_Os03g07800
I
0.788
SB01G045570
Sorghum bicolor
Sb01g045570
I
0.731
GRMZM2G142557
Zea mays
GRMZM2G142557
I
0.726
BRADI1G73030
Brachypodium distachyon
BRADI1G73030
I
0.716