LOC_Os03g07800 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os03g07800 T44983_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g07800.1 RRM 18 88
LOC_Os03g07800.1 RRM 111 182
LOC_Os03g07800.1 RRM 229 293

Links

Other RRM family RBPs
Other Oryza sativa RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G045570 Sorghum bicolor Sb01g045570 I 0.923
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.913
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.894
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.788
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.788
BGIOSIBCE009857 Oryza indica BGIOSIBCE009857 N 0.788
30169.m006434 Ricinus communis 30169.m006434 I 0.788
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.788
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.779
MDP0000276227 Malus x domestica MDP0000276227 I 0.769
PK28027.1 Cannabis sativa PK28027.1 I 0.769
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.769
ppa005940m Prunus persica ppa005940m I 0.764
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.764
mgf023806m Mimulus guttatus mgf023806m I 0.760
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.755
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.755
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.736
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.736
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.736
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.731
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.721
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.721
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.716
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.707
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.707
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.707
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.702
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.702
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.702