GRMZM2G142557 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G142557 T54153_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.764
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G142557_P01 RRM 17 87
GRMZM2G142557_P01 RRM 110 181
GRMZM2G142557_P01 RRM 228 292

Links

Other RRM family RBPs
Other Zea mays RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G045570 Sorghum bicolor Sb01g045570 I 0.990
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.923
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.913
30169.m006434 Ricinus communis 30169.m006434 I 0.837
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.817
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.817
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.817
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.812
MDP0000276227 Malus x domestica MDP0000276227 I 0.803
ppa005940m Prunus persica ppa005940m I 0.803
PK28027.1 Cannabis sativa PK28027.1 I 0.798
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.779
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.774
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.774
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.769
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.764
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.764
mgf023806m Mimulus guttatus mgf023806m I 0.760
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.760
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.736
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.726
BGIOSIBCE009857 Oryza indica BGIOSIBCE009857 N 0.726
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.716
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.716
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.712
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.712
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.712
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.712
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.712
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.712
MDP0000123012 Malus x domestica MDP0000123012 N 0.707
MDP0000123414 Malus x domestica MDP0000123414 N 0.702
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.702
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.702
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.702