BRADI1G73030 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI1G73030 T33174_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G73030.1 RRM 19 89
BRADI1G73030.1 RRM 112 183
BRADI1G73030.1 RRM 230 294

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G045570 Sorghum bicolor Sb01g045570 I 0.923
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.923
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.894
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.803
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.793
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.793
30169.m006434 Ricinus communis 30169.m006434 I 0.793
ppa005940m Prunus persica ppa005940m I 0.784
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.779
MDP0000276227 Malus x domestica MDP0000276227 I 0.779
PK28027.1 Cannabis sativa PK28027.1 I 0.774
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.755
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.755
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.755
mgf023806m Mimulus guttatus mgf023806m I 0.750
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.750
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.736
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.731
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.731
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.726
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.716
BGIOSIBCE009857 Oryza indica BGIOSIBCE009857 N 0.716
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.707