CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI1G22210
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI1G22210
T33129_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G22210.1
RRM
34
104
LFVGGLSYATDDPTLKDAFSHYGDVCEARVIIDRDTGRSKGFGFITYTSSEAAAAAISAMDGKDLQGRMVK
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os07g41120
Oryza sativa
LOC_Os07g41120
N
0.845
PDK_20s1328241g004
Phoenix dactylifera
PDK_20s1328241g004
N
0.718
cassava29352.valid.m1
Manihot esculenta
cassava29352.valid.m1
N
0.704
cassava29351.valid.m1
Manihot esculenta
cassava29351.valid.m1
N
0.704
LOC_Os10g17454
Oryza sativa
LOC_Os10g17454
N
0.704