PDK_20s1328241g004 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s1328241g004 T58066_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1328241g004 RRM 33 103

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00007865001 Vitis vinifera GSVIVG00007865001 N 0.817
Cucsa.198260 Cucumis sativus Cucsa.198260 N 0.803
MDP0000635271 Malus x domestica MDP0000635271 N 0.803
cassava43399.valid.m1 Manihot esculenta cassava43399.valid.m1 N 0.789
PDK_20s1615461g006 Phoenix dactylifera PDK_20s1615461g006 N 0.789
ppa010113m Prunus persica ppa010113m N 0.789
Glyma05g00400.1 Glycine max Glyma05g00400.1 N 0.775
SB08G015580 Sorghum bicolor Sb08g015580 N 0.775
mgf007732m Mimulus guttatus mgf007732m N 0.775
mgf016144m Mimulus guttatus mgf016144m N 0.775
Glyma17g08630.1 Glycine max Glyma17g08630.1 N 0.775
mgf014059m Mimulus guttatus mgf014059m N 0.775
mgf012875m Mimulus guttatus mgf012875m N 0.775
GRMZM2G009448 Zea mays GRMZM2G009448 N 0.761
30138.m003973 Ricinus communis 30138.m003973 N 0.761
cassava29351.valid.m1 Manihot esculenta cassava29351.valid.m1 N 0.761
cassava29352.valid.m1 Manihot esculenta cassava29352.valid.m1 N 0.761
BGIOSIBCE036678 Oryza indica BGIOSIBCE036678 N 0.761
LOC_Os12g31800 Oryza sativa LOC_Os12g31800 N 0.761
LOC_Os10g17454 Oryza sativa LOC_Os10g17454 N 0.761
B9I2R7_POPTR Populus trichocarpa POPTR_0012s05870 N 0.761
PK15111.1 Cannabis sativa PK15111.1 N 0.746
PDK_20s1742611g001 Phoenix dactylifera PDK_20s1742611g001 N 0.746
Glyma08g26900.1 Glycine max Glyma08g26900.1 N 0.746
MDP0000302917 Malus x domestica MDP0000302917 N 0.732
GRMZM2G150521 Zea mays GRMZM2G150521 N 0.732
MDP0000255642 Malus x domestica MDP0000255642 N 0.732
BRADI3G24720 Brachypodium distachyon BRADI3G24720 N 0.732
Glyma18g50150.1 Glycine max Glyma18g50150.1 N 0.732
Cucsa.113230 Cucumis sativus Cucsa.113230 N 0.718
XM_002864670.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002097 N 0.718
BRADI1G22210 Brachypodium distachyon BRADI1G22210 N 0.718
A9PIG6_POPTR Populus trichocarpa POPTR_0015s06810 N 0.718
LOC_Os07g41120 Oryza sativa LOC_Os07g41120 N 0.704
GRMZM2G131167 Zea mays GRMZM2G131167 N 0.704
Medtr3g105170 Medicago truncatula Medtr3g105170 N 0.704
GR-RBP3 Arabidopsis thaliana AT5G61030-TAIR-G N 0.704