CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ANIA_10574
(
Aspergillus nidulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANIAG00005779
T33628_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANIAP00005779
RRM
831
898
VVVKNLPQGTTEHKVRQFFRDCGAINGVKMMPGEDGKSEVAMIEFNTRDDAAAAQTRDQKTFDGNTIQ
CADANIAP00005779
RRM
907
972
LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSALALDGSAVGNG
CADANIAP00005779
RRM
998
1066
IHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQEFRGRPLH
CADANIAP00005779
RRM
1117
1182
LGLMNVPDTVNDARIRALAEPYGKLVKVVLRPDHQGAIVEYADVNHAGKAALELEGQEITPGRKLH
Links
Other
RRM
family RBPs
Other
Aspergillus nidulans
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pg.00771_#_298
Aspergillus carbonarius
fgenesh1_pg.00771_#_298
N
0.807
AFLA_042700
Aspergillus flavus
CADAFLAG00005597
N
0.799
AO090011000439
Aspergillus oryzae
CADAORAG00005193
N
0.799
An07g05350
Aspergillus niger
CADANGAG00005807
N
0.784
ATEG_05757
Aspergillus terreus
CADATEAG00002080
N
0.781
ACLA_093160
Aspergillus clavatus
CADACLAG00008305
N
0.766
NFIA_034170
Neosartorya fischeri
CADNFIAG00003174
N
0.751
AFUA_2G01820
Aspergillus fumigatus
CADAFUAG00003778
N
0.743