CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ATEG_05757
(
Aspergillus terreus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADATEAG00002080
T33735_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADATEAP00002080
RRM
826
893
VIVKNLPHQTTEHKVRQFFRHCGTINSLKMLPGEDGNSETAIIEFNSRDEALVAQTRDQKLIDENTIE
CADATEAP00002080
RRM
902
968
LFVTNFPPTADEKYIRDLFHEFGEIIDIRFPSLKYNTHRRFCYVQFKTGEAAQNATKLDGTVVGNNL
CADATEAP00002080
RRM
993
1061
IHVSNVDWKANEDDLKELFSKYGHVELVRIPRKVDGGSKGFGYVVFSTKEEAQAALALHEHEFRSRPLH
CADATEAP00002080
RRM
1112
1177
LALMNVPDTVNDARIRSLVEPYGQLIKVVLRPDHQGAIVEFADVHAAGKASLELSGQEIAPGRPLR
Links
Other
RRM
family RBPs
Other
Aspergillus terreus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_093160
Aspergillus clavatus
CADACLAG00008305
N
0.815
fgenesh1_pg.00771_#_298
Aspergillus carbonarius
fgenesh1_pg.00771_#_298
N
0.815
AO090011000439
Aspergillus oryzae
CADAORAG00005193
N
0.811
AFLA_042700
Aspergillus flavus
CADAFLAG00005597
N
0.811
NFIA_034170
Neosartorya fischeri
CADNFIAG00003174
N
0.804
An07g05350
Aspergillus niger
CADANGAG00005807
N
0.804
AFUA_2G01820
Aspergillus fumigatus
CADAFUAG00003778
N
0.800
ANIA_10574
Aspergillus nidulans
CADANIAG00005779
N
0.781