CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MSI2
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000005452
T34636_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000005311
RRM
8
77
IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MSI2
Homo sapiens
ENSG00000153944
I
1.000
ENSDORG00000005394
Dipodomys ordii
ENSDORG00000005394
N
1.000
MSI2
Tursiops truncatus
ENSTTRG00000002189
N
1.000
LOC100390978
Callithrix jacchus
ENSCJAG00000013998
I
1.000
ENSPPYG00000008244
Pongo pygmaeus
ENSPPYG00000008244
N
0.986
MSI2
Ochotona princeps
ENSOPRG00000000872
N
0.971
MSI1
Spermophilus tridecemlineatus
ENSSTOG00000009799
N
0.929
A2PYH9_BOVIN
Bos taurus
ENSBTAG00000009800
N
0.929
MSI1
Procavia capensis
ENSPCAG00000002300
N
0.929
MSI1
Tupaia belangeri
ENSTBEG00000007182
N
0.914
MSI1
Microcebus murinus
ENSMICG00000000708
N
0.900
MSI2
Echinops telfairi
ENSETEG00000012450
N
0.861
Rbp6
Drosophila melanogaster
FBgn0260943
I
0.857
MSI1
Oryzias latipes
ENSORLG00000008982
N
0.833
MSI1
Sus scrofa
ENSSSCG00000017619
N
0.736
WUBG_09077
Wuchereria bancrofti
WUBG_09077
N
0.732
LOAG_14850
Loa loa
LOAG_14850
N
0.732
CJA15670
Caenorhabditis japonica
CJA15670
N
0.729
MSI1
Gallus gallus
ENSGALG00000007227
N
0.722
Bm1_16000
Brugia malayi
Bm1_16000
N
0.718