LOC100390978 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000013998 T35605_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.779
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000025742 RRM 51 120
ENSCJAP00000025750 RRM 4 66
ENSCJAP00000025750 RRM 86 155

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

81 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI2 Homo sapiens ENSG00000153944 I 1.000
ENSDORG00000005394 Dipodomys ordii ENSDORG00000005394 N 1.000
MSI2 Anolis carolinensis ENSACAG00000005452 N 1.000
MSI2 Tursiops truncatus ENSTTRG00000002189 N 1.000
ENSPPYG00000008244 Pongo pygmaeus ENSPPYG00000008244 N 0.986
MSI2 Ochotona princeps ENSOPRG00000000872 N 0.971
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.955
A2PYH9_BOVIN Bos taurus ENSBTAG00000009800 N 0.929
MSI2 Microcebus murinus ENSMICG00000013598 I 0.929
MSI1 Spermophilus tridecemlineatus ENSSTOG00000009799 N 0.929
Msi2 Mus musculus ENSMUSG00000069769 I 0.929
MSI1 Procavia capensis ENSPCAG00000002300 N 0.929
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.929
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.929
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.929
MSI1 Tupaia belangeri ENSTBEG00000007182 N 0.914
msi2b Danio rerio ENSDARG00000032614 I 0.914
MSI1 Microcebus murinus ENSMICG00000000708 N 0.900
AAA50004 Xenopus laevis AAA50004 I 0.900
AAI69841 Xenopus laevis AAI69841 I 0.900
MSI2 Canis familiaris ENSCAFG00000017418 I 0.886
msi2a Danio rerio ENSDARG00000033901 I 0.879
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.875
MSI2 Echinops telfairi ENSETEG00000012450 N 0.861
Rbp6 Drosophila melanogaster FBgn0260943 I 0.857
LOC100070744 Equus caballus ENSECAG00000011435 I 0.842
msi1 Danio rerio ENSDARG00000010710 I 0.835
MSI1 Oryzias latipes ENSORLG00000008982 N 0.833
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.820
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.812
MSI1 Felis catus ENSFCAG00000011007 I 0.812
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.812
Msi1 Mus musculus ENSMUSG00000054256 I 0.806
MSI1 Echinops telfairi ENSETEG00000004756 I 0.805
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.805
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.797
AGAP006656 Anopheles gambiae AGAP006656 N 0.789
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.786
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.784
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.782
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.782
LOC100053469 Equus caballus ENSECAG00000017526 I 0.782
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.779
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.779
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.779
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.779
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.779
MSI1 Homo sapiens ENSG00000135097 D 0.779
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.779
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.779
AAA49920 Xenopus laevis AAA49920 I 0.771
CBF67566 Xenopus laevis CBF67566 I 0.771
CBU92439 Xenopus laevis CBU92439 I 0.771
estExt_Genewise1Plus.C_620039 Capitella teleta estExt_Genewise1Plus.C_620039 I 0.771
AAH82667 Xenopus laevis AAH82667 I 0.771
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.771
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.767
MSI1 Takifugu rubripes ENSTRUG00000015636 I 0.764
AAA49919 Xenopus laevis AAA49919 I 0.764
AAH84959 Xenopus laevis AAH84959 I 0.764
MSI1 Canis familiaris ENSCAFG00000010283 I 0.761
MSI2 Bos taurus ENSBTAG00000004406 N 0.757
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.757
MSI2 Tarsius syrichta ENSTSYG00000011839 N 0.752
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.752
gw1.72.166.1 Daphnia pulex gw1.72.166.1 I 0.743
MSI1 Sus scrofa ENSSSCG00000017619 N 0.736
GF24401 Drosophila ananassae FBgn0101395 I 0.736
GG15829 Drosophila erecta FBgn0108068 I 0.736
GH15068 Drosophila grimshawi FBgn0122543 I 0.736
GM24349 Drosophila sechellia FBgn0179213 I 0.736
GD12423 Drosophila simulans FBgn0184155 I 0.736
GK18043 Drosophila willistoni FBgn0220042 I 0.736
GI12835 Drosophila mojavensis FBgn0135592 I 0.736
GE22169 Drosophila yakuba FBgn0239397 I 0.736
LOAG_14850 Loa loa LOAG_14850 N 0.732
WUBG_09077 Wuchereria bancrofti WUBG_09077 N 0.732
MSI2 Vicugna pacos ENSVPAG00000006837 N 0.729
CJA15670 Caenorhabditis japonica CJA15670 N 0.729
MSI1 Gallus gallus ENSGALG00000007227 N 0.722
Bm1_16000 Brugia malayi Bm1_16000 N 0.718