CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MSI1
(
Sus scrofa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSSCG00000017619
T41542_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000018673
RRM
9
78
IFVGGLSANTVVEDVKQYFEQFGKVATHGVGAARVLLFPLGFGFVTFENEDVVEKVCEIHFHEINNKMVE
Links
Other
RRM
family RBPs
Other
Sus scrofa
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MSI1
Gallus gallus
ENSGALG00000007227
N
0.746
MSI2
Echinops telfairi
ENSETEG00000012450
N
0.746
MSI2
Anolis carolinensis
ENSACAG00000005452
N
0.736
LOC100390978
Callithrix jacchus
ENSCJAG00000013998
I
0.736
MSI2
Homo sapiens
ENSG00000153944
I
0.736
MSI2
Tursiops truncatus
ENSTTRG00000002189
N
0.736
ENSDORG00000005394
Dipodomys ordii
ENSDORG00000005394
N
0.736
ENSPPYG00000008244
Pongo pygmaeus
ENSPPYG00000008244
N
0.722
MSI1
Oryzias latipes
ENSORLG00000008982
N
0.718
MSI2
Ochotona princeps
ENSOPRG00000000872
N
0.708