CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NCL
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000010783
T36331_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000008367
RRM
400
459
XXXVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKNLEEKQGTEIDGRSIS
ENSDNOP00000008367
RRM
489
555
LVLNNLSYNATEETLQEVFEKATSIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR
ENSDNOP00000008367
RRM
575
640
LFVKGLSEDTTEETLKESFDGSIRARIVTDRETGSSKGFVDFNSEEGAKAAKEAIEDGEIDGNKVT
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCL
Homo sapiens
ENSG00000115053
D
0.923
ENSMLUG00000014547
Myotis lucifugus
ENSMLUG00000014547
N
0.900
NCL
Pan troglodytes
ENSPTRG00000013025
I
0.826
LOC100395223
Callithrix jacchus
ENSCJAG00000013538
I
0.826
NCL
Macaca mulatta
ENSMMUG00000018094
I
0.800