LOC100395223 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000013538 T35598_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.996
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000024967 RRM 313 381
ENSCJAP00000024967 RRM 399 464
ENSCJAP00000024967 RRM 492 558
ENSCJAP00000024967 RRM 578 645
ENSCJAP00000024987 RRM 255 323
ENSCJAP00000024987 RRM 341 406
ENSCJAP00000024987 RRM 434 500
ENSCJAP00000024987 RRM 520 587
ENSCJAP00000044615 RRM 290 358
ENSCJAP00000044615 RRM 376 441
ENSCJAP00000044615 RRM 469 535
ENSCJAP00000044615 RRM 555 622
ENSCJAP00000045683 RRM 195 235
ENSCJAP00000045683 RRM 263 329
ENSCJAP00000045683 RRM 349 416
ENSCJAP00000048861 RRM 179 247
ENSCJAP00000048861 RRM 265 330
ENSCJAP00000048861 RRM 358 424
ENSCJAP00000048861 RRM 444 511

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCL Pan troglodytes ENSPTRG00000013025 I 1.000
NCL Homo sapiens ENSG00000115053 D 1.000
NCL Macaca mulatta ENSMMUG00000018094 I 0.996
NCL Gorilla gorilla ENSGGOG00000004300 I 0.996
NCL Tarsius syrichta ENSTSYG00000004355 I 0.978
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.978
NCL Canis familiaris ENSCAFG00000011037 I 0.978
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.974
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.970
NCL Bos taurus ENSBTAG00000016174 I 0.970
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.967
NCL Tursiops truncatus ENSTTRG00000009094 I 0.963
NCL Microcebus murinus ENSMICG00000002538 I 0.956
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.952
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.922
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.919
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.919
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.885
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.881
Ncl Mus musculus ENSMUSG00000026234 I 0.881
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.863
Ncl Dipodomys ordii ENSDORG00000012513 I 0.859
NCL Cavia porcellus ENSCPOG00000001034 I 0.852
ENSMLUG00000014547 Myotis lucifugus ENSMLUG00000014547 N 0.841
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.837
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.826
NCL Vicugna pacos ENSVPAG00000001796 I 0.826
NCL Loxodonta africana ENSLAFG00000013061 I 0.826
NCL Dasypus novemcinctus ENSDNOG00000010783 N 0.826
NCL Macropus eugenii ENSMEUG00000012335 I 0.815
NCL Monodelphis domestica ENSMODG00000002470 I 0.812
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.811
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.804
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.748
NCL Sorex araneus ENSSARG00000010007 I 0.737
ENSGGOG00000022986 Gorilla gorilla ENSGGOG00000022986 I 0.711
NUCL_CHICK Gallus gallus ENSGALG00000007705 I 0.705