CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ROD1
(
Erinaceus europaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSEEUG00000014435
T36847_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSEEUP00000013191
RRM
173
239
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNHQFQALLQYADPLNAHYAKMALDGQNIYNACCT
ENSEEUP00000013191
RRM
349
415
LLVTNLNPDXXXXXXXXXXXXVYGDVHRVKIMFNKKENALVQMADANQAHLXXXXXXXQRLYGKVLR
ENSEEUP00000013191
RRM
466
505
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQDFIPLGS
Links
Other
RRM
family RBPs
Other
Erinaceus europaeus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ROD1
Myotis lucifugus
ENSMLUG00000006812
N
0.816
ROD1
Dasypus novemcinctus
ENSDNOG00000012274
N
0.753
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.739
ROD1
Homo sapiens
ENSG00000119314
I
0.739
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.734
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.734