CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ROD1
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000021263
T40780_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.801
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.801
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.801
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000001695
RRM
61
114
LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSPTRP00000001695
RRM
184
250
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT
ENSPTRP00000001695
RRM
360
426
LLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSPTRP00000001695
RRM
477
541
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
ENSPTRP00000036320
RRM
77
130
LHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY
ENSPTRP00000036320
RRM
200
266
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT
ENSPTRP00000036320
RRM
376
442
LLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSPTRP00000036320
RRM
493
526
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQG
ENSPTRP00000059717
RRM
89
155
IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT
ENSPTRP00000059717
RRM
265
331
LLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR
ENSPTRP00000059717
RRM
382
446
LHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
93 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ROD1
Homo sapiens
ENSG00000119314
I
1.000
ROD1
Macaca mulatta
ENSMMUG00000000464
I
1.000
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
1.000
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.996
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.996
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.995
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.988
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.976
ROD1
Tarsius syrichta
ENSTSYG00000010375
N
0.973
ROD1
Equus caballus
ENSECAG00000021243
I
0.972
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.972
Rod1
Mus musculus
ENSMUSG00000028382
I
0.972
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.968
ROD1
Bos taurus
ENSBTAG00000016750
I
0.965
ROD1
Procavia capensis
ENSPCAG00000002288
N
0.959
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.945
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.937
ROD1
Sorex araneus
ENSSARG00000002649
N
0.930
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.925
ROD1
Choloepus hoffmanni
ENSCHOG00000002039
N
0.918
ROD1
Tursiops truncatus
ENSTTRG00000009283
N
0.899
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.885
ROD1
Vicugna pacos
ENSVPAG00000006136
N
0.872
ROD1
Pteropus vampyrus
ENSPVAG00000002177
N
0.848
ROD1
Danio rerio
ENSDARG00000043757
I
0.832
ROD1
Myotis lucifugus
ENSMLUG00000006812
N
0.809
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.801
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.801
AAF00041
Xenopus laevis
AAF00041
I
0.798
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.798
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.794
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.794
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.794
PTBP1
Homo sapiens
ENSG00000011304
D
0.794
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.794
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.794
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.793
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.793
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.790
AAH45068
Xenopus laevis
AAH45068
I
0.787
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.786
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.786
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.786
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.785
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.778
PTBP1
Equus caballus
ENSECAG00000018845
I
0.778
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.771
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.767
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.763
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.760
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.759
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.750
ROD1
Taeniopygia guttata
ENSTGUG00000001262
N
0.749
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.747
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.747
AAH97557
Xenopus laevis
AAH97557
I
0.747
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.746
PTBP2
Erinaceus europaeus
ENSEEUG00000009973
N
0.741
PTBP2
Sus scrofa
ENSSSCG00000006879
N
0.741
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.739
ROD1
Erinaceus europaeus
ENSEEUG00000014435
N
0.739
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.738
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.736
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.733
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.733
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.733
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.733
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.733
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.733
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.733
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.733
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.733
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.733
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.733
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.733
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.733
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.733
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.733
PTBP2
Homo sapiens
ENSG00000117569
I
0.733
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.732
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.730
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.729
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.729
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.729
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.728
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.721
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.720
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.719
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.712
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.708
ROD1
Dasypus novemcinctus
ENSDNOG00000012274
N
0.704
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.700