ROD1 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000017686 T35650_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.789
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.789
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.789
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000032631 RRM 31 84
ENSCJAP00000032631 RRM 154 220
ENSCJAP00000032631 RRM 330 396
ENSCJAP00000032631 RRM 447 511
ENSCJAP00000032636 RRM 67 120
ENSCJAP00000032636 RRM 190 256
ENSCJAP00000032636 RRM 366 432
ENSCJAP00000032636 RRM 483 547
ENSCJAP00000033622 RRM 89 155
ENSCJAP00000033622 RRM 265 331
ENSCJAP00000033622 RRM 382 446

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

92 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Homo sapiens ENSG00000119314 I 0.995
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.995
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.990
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.984
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.984
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.980
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.972
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.960
ROD1 Sus scrofa ENSSSCG00000005466 I 0.957
ROD1 Equus caballus ENSECAG00000021243 I 0.957
Rod1 Mus musculus ENSMUSG00000028382 I 0.957
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.953
ROD1 Bos taurus ENSBTAG00000016750 I 0.949
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.929
ROD1 Canis familiaris ENSCAFG00000003015 I 0.921
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.917
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.870
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.850
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.846
ROD1 Sorex araneus ENSSARG00000002649 N 0.834
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.834
ROD1 Procavia capensis ENSPCAG00000002288 N 0.826
ROD1 Danio rerio ENSDARG00000043757 I 0.824
ROD1 Myotis lucifugus ENSMLUG00000006812 N 0.804
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.789
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.789
AAF00041 Xenopus laevis AAF00041 I 0.786
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.786
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.782
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.782
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.782
PTBP1 Homo sapiens ENSG00000011304 D 0.782
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.782
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.781
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.781
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.778
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.778
AAH45068 Xenopus laevis AAH45068 I 0.775
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.775
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.774
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.774
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.774
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.773
PTBP1 Equus caballus ENSECAG00000018845 I 0.767
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.767
ptbp1a Danio rerio ENSDARG00000019362 I 0.760
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.756
ptbp1b Danio rerio ENSDARG00000031907 I 0.751
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.748
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.747
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.738
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.737
PTBP2 Erinaceus europaeus ENSEEUG00000009973 N 0.736
PTBP2 Sus scrofa ENSSSCG00000006879 N 0.736
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.735
AAH97557 Xenopus laevis AAH97557 I 0.735
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.735
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.735
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.735
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.734
ROD1 Erinaceus europaeus ENSEEUG00000014435 N 0.734
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.727
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.725
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.721
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.721
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.721
PTBP2 Homo sapiens ENSG00000117569 I 0.721
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.721
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.721
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.721
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.721
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.721
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.721
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.721
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.721
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.721
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.721
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.721
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.721
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.720
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.720
LOC100057336 Equus caballus ENSECAG00000015783 I 0.718
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.717
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.717
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.717
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.716
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.711
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.709
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.708
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.700
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.700