CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBFOX3
(
Otolemur garnettii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOGAG00000015319
T39909_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOGAP00000013721
RRM
119
168
XXQFGKILDVEIIFNERGKGFGFVTFETSSDADRAREKLNGTIVEGRKIE
Links
Other
RRM
family RBPs
Other
Otolemur garnettii
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Rbfox3
Mus musculus
ENSMUSG00000025576
I
0.923
RBFOX2
Microcebus murinus
ENSMICG00000014135
I
0.902
RBFOX1
Echinops telfairi
ENSETEG00000003771
N
0.902
RBFOX1
Tarsius syrichta
ENSTSYG00000005334
I
0.902
RBFOX2
Sorex araneus
ENSSARG00000001081
N
0.863
ENSPPYG00000011766
Pongo pygmaeus
ENSPPYG00000011766
I
0.863
a2bp1
Xenopus tropicalis
ENSXETG00000005126
I
0.863
ENSPPYG00000007079
Pongo pygmaeus
ENSPPYG00000007079
I
0.863
ENSTRUG00000002748
Takifugu rubripes
ENSTRUG00000002748
I
0.827
rbfox2
Danio rerio
ENSDARG00000052182
N
0.808
RBFOX2
Pteropus vampyrus
ENSPVAG00000015844
N
0.745
ENSMEUG00000004218
Macropus eugenii
ENSMEUG00000004218
N
0.706