CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBFOX2
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000015844
T40975_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000014950
RRM
127
171
QILDVEIINERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
ENSPVAP00000016940
RRM
206
250
QILDVEIINERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000007079
Pongo pygmaeus
ENSPPYG00000007079
I
0.878
a2bp1
Xenopus tropicalis
ENSXETG00000005126
I
0.878
ENSPPYG00000011766
Pongo pygmaeus
ENSPPYG00000011766
I
0.878
RBFOX1
Tarsius syrichta
ENSTSYG00000005334
I
0.843
RBFOX2
Microcebus murinus
ENSMICG00000014135
I
0.843
RBFOX1
Echinops telfairi
ENSETEG00000003771
N
0.784
RBFOX2
Sorex araneus
ENSSARG00000001081
N
0.784
ENSTRUG00000002748
Takifugu rubripes
ENSTRUG00000002748
I
0.750
Rbfox3
Mus musculus
ENSMUSG00000025576
I
0.750
RBFOX3
Otolemur garnettii
ENSOGAG00000015319
N
0.745
rbfox2
Danio rerio
ENSDARG00000052182
N
0.712