ENSTRUG00000002748 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000002748 T42211_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.942
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.942
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.942
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.884
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000006386 RRM 128 196
ENSTRUP00000006387 RRM 114 182
ENSTRUP00000006388 RRM 114 155
ENSTRUP00000006389 RRM 1 52

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

170 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.971
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.957
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.957
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.942
RBM9_BOVIN Bos taurus ENSBTAG00000020125 I 0.942
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.942
CAL91351 Xenopus laevis CAL91351 I 0.942
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.942
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.942
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.942
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.942
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.942
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.942
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.942
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.942
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.942
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.942
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.942
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.942
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.942
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.942
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.942
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.942
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.942
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.942
RBFOX2 Homo sapiens ENSG00000100320 I 0.942
A2BP1 Homo sapiens ENSG00000078328 D 0.942
A2BP1 Gallus gallus ENSGALG00000007366 I 0.942
RBM9 Gallus gallus ENSGALG00000012540 I 0.942
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.942
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.942
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.942
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.942
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.942
a2bp1 Danio rerio ENSDARG00000014746 D 0.942
FP236187.1 Danio rerio ENSDARG00000010083 I 0.942
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.942
CAL91350 Xenopus laevis CAL91350 I 0.942
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.942
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.942
LOC100069362 Equus caballus ENSECAG00000018923 I 0.942
LOC100066233 Equus caballus ENSECAG00000012667 I 0.942
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.942
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.942
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.942
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.942
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.942
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.942
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.942
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.942
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.942
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.942
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.942
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.942
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.942
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.942
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.942
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.942
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.942
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.942
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.942
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.942
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.942
A4F5G6 Xenopus laevis A4F5G6 I 0.942
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.942
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.942
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.942
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.942
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.942
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.942
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.942
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.942
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.942
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.942
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.928
RBFOX3 Homo sapiens ENSG00000167281 I 0.928
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.928
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.928
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.928
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.928
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.928
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.928
RBFOX3 Equus caballus ENSECAG00000023811 I 0.928
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.928
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.928
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.928
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.928
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.928
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.928
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.928
AAI55921 Xenopus laevis AAI55921 I 0.928
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.928
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.928
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.928
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.928
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.928
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.928
AAI69563 Xenopus laevis AAI69563 I 0.928
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.928
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.928
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.928
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.913
RBFOX3 Callithrix jacchus ENSCJAG00000009563 I 0.913
RBFOX1 Microcebus murinus ENSMICG00000003371 N 0.905
Rbfox1 Dipodomys ordii ENSDORG00000010024 N 0.905
PHUM098700 Pediculus humanus PHUM098700 I 0.899
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.899
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.899
rbfox2 Danio rerio ENSDARG00000052182 N 0.885
GD14245 Drosophila simulans FBgn0185930 I 0.884
GM25214 Drosophila sechellia FBgn0180074 I 0.884
GJ13667 Drosophila virilis FBgn0200888 I 0.884
GK12272 Drosophila willistoni FBgn0214282 I 0.884
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.884
GE21749 Drosophila yakuba FBgn0238995 I 0.884
GI11474 Drosophila mojavensis FBgn0134235 I 0.884
GH14949 Drosophila grimshawi FBgn0122424 I 0.884
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.884
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.884
a2bp1 Drosophila melanogaster FBgn0052062 D 0.884
GF10597 Drosophila ananassae FBgn0087638 I 0.884
GG15438 Drosophila erecta FBgn0107689 I 0.884
AAEL017168 Aedes aegypti AAEL017168 I 0.884
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.884
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.884
AGAP006089 Anopheles gambiae AGAP006089 I 0.884
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.884
rbfox1l Danio rerio ENSDARG00000021184 I 0.884
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.870
ISCW013123 Ixodes scapularis ISCW013123 I 0.870
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.870
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.870
RBFOX2 Microcebus murinus ENSMICG00000014135 I 0.865
a2bp1 Xenopus tropicalis ENSXETG00000005126 I 0.865
RBFOX1 Tarsius syrichta ENSTSYG00000005334 I 0.865
GL15466 Drosophila persimilis FBgn0153070 N 0.857
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.855
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.855
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.855
AAH72029 Xenopus laevis AAH72029 N 0.851
RBFOX1 Tetraodon nigroviridis ENSTNIG00000002567 N 0.848
RBFOX1 Echinops telfairi ENSETEG00000003771 N 0.846
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.841
ENSORLG00000004268 Oryzias latipes ENSORLG00000004268 N 0.830
RBFOX3 Otolemur garnettii ENSOGAG00000015319 N 0.827
RBFOX2 Sorex araneus ENSSARG00000001081 N 0.808
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.797
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.797
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.797
RBFOX3 Tupaia belangeri ENSTBEG00000004296 N 0.786
ENSCSAVG00000005757 Ciona savignyi ENSCSAVG00000005757 N 0.786
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.786
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.783
Bm1_08900 Brugia malayi Bm1_08900 I 0.783
LOAG_04679 Loa loa LOAG_04679 I 0.783
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.768
Smp_139980 Schistosoma mansoni Smp_139980 I 0.768
CJA09998 Caenorhabditis japonica CJA09998 I 0.768
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.754
RBFOX1 Felis catus ENSFCAG00000008241 I 0.754
fox-1 Caenorhabditis elegans T07D1.4 D 0.754
Smp_138880 Schistosoma mansoni Smp_138880 I 0.754
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.754
CBG02108 Caenorhabditis briggsae CBG02108 I 0.754
CRE07377 Caenorhabditis remanei CRE07377 I 0.754
RBFOX2 Pteropus vampyrus ENSPVAG00000015844 N 0.750
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.739
CBN11651 Caenorhabditis brenneri CBN11651 I 0.739
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.710