CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NONO
(
Oryzias latipes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSORLG00000012801
T40205_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000016028
RRM
75
139
LFVGNLPTGVTEDDLEKLFAKYGKASEIFINKERGFGFIRLETRIIAEIARAELDDHVFRGRPIR
ENSORLP00000016028
RRM
149
213
LSVKNLPEFASNDLLEEAFAIFGQVERAVVIVDDRGRPTGKGIVEFTSKPAARKALDKCNDGAYL
Links
Other
RRM
family RBPs
Other
Oryzias latipes
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NONO
Takifugu rubripes
ENSTRUG00000005554
I
0.892
NONO
Gasterosteus aculeatus
ENSGACG00000011824
I
0.885
nono
Danio rerio
ENSDARG00000020482
I
0.769
BAE54372
Xenopus laevis
BAE54372
I
0.746
nono
Xenopus tropicalis
ENSXETG00000020868
I
0.746
AAH45128
Xenopus laevis
AAH45128
I
0.746
ENSTNIG00000011331
Tetraodon nigroviridis
ENSTNIG00000011331
I
0.733
ENSTRUG00000003783
Takifugu rubripes
ENSTRUG00000003783
I
0.718