CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2AF2
(
Tarsius syrichta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTSYG00000007432
T42460_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000006800
RRM
19
63
APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK
ENSTSYP00000006800
RRM
99
169
LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL
ENSTSYP00000006800
RRM
237
262
VEDVRDECSKYGLVKSIEIPRPVDGV
Links
Other
RRM
family RBPs
Other
Tarsius syrichta
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000010429
Pongo pygmaeus
ENSPPYG00000010429
N
1.000
ENSPCAG00000014399
Procavia capensis
ENSPCAG00000014399
N
0.972
U2AF2
Felis catus
ENSFCAG00000011504
I
0.835
LOC100400743
Callithrix jacchus
ENSCJAG00000017128
I
0.802
U2af2
Dipodomys ordii
ENSDORG00000003250
I
0.798
U2AF2
Pan troglodytes
ENSPTRG00000011523
I
0.798
XM_001119590.1
Macaca mulatta
ENSMMUG00000019197
I
0.788