ENSPPYG00000003855 (Pongo pygmaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPPYG00000003855 T40462_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.844
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.844
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.844
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.823
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPPYP00000004415 RRM 17 85
ENSPPYP00000004415 RRM 107 176

Links

Other RRM family RBPs
Other Pongo pygmaeus RBPs

190 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.828
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.793
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.793
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.793
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.793
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.789
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.786
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.786
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.786
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.786
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.786
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.786
LOC100054206 Equus caballus ENSECAG00000006699 I 0.785
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.785
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.784
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.782
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.779
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.779
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.779
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.779
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.779
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.779
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.779
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.779
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.778
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.775
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.772
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.772
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.772
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.772
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.772
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.772
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.771
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.771
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.771
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.768
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.766
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.766
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.766
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.766
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.766
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.766
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.764
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.764
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.764
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.764
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.761
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.759
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.759
LOC785445 Bos taurus ENSBTAG00000025621 I 0.759
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.759
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.757
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.757
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.753
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.752
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.752
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.752
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.752
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.752
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.752
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.752
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.752
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.752
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.750
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.750
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.750
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.750
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.745
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.745
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.745
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.745
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.745
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.745
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.743
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.743
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.743
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.743
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.743
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.743
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.743
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.739
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.739
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.738
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.738
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.738
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.738
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.738
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.738
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.738
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.738
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.738
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.738
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.738
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.736
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.736
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.736
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.736
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.736
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.734
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.734
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.734
ENSCJAG00000034783 Callithrix jacchus ENSCJAG00000034783 I 0.734
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.733
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.731
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.731
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.731
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.730
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.730
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.729
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.729
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.729
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.729
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.729
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.724
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.724
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.724
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.724
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.724
AAH45260 Xenopus laevis AAH45260 I 0.724
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.723
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.721
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.721
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.718
CBF67672 Xenopus laevis CBF67672 I 0.717
CBU92546 Xenopus laevis CBU92546 I 0.717
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.717
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.717
AAH72090 Xenopus laevis AAH72090 I 0.717
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.717
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.717
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.716
RGD1564416 Rattus norvegicus ENSRNOG00000023882 I 0.716
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.714
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.714
ENSCJAG00000007639 Callithrix jacchus ENSCJAG00000007639 I 0.712
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.711
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.710
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.710
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.710
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.710
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.710
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.710
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.710
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.710
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.710
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.709
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.707
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.706
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.704
CBF67555 Xenopus laevis CBF67555 I 0.703
P17130 Xenopus laevis P17130 I 0.703
CBU92428 Xenopus laevis CBU92428 I 0.703
AAA49741 Xenopus laevis AAA49741 I 0.703
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.703
AAA49742 Xenopus laevis AAA49742 I 0.703
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.700
ENSCJAG00000002606 Callithrix jacchus ENSCJAG00000002606 I 0.700
ENSBTAG00000021755 Bos taurus ENSBTAG00000021755 I 0.700