ENSCAFG00000017494 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000017494 T35162_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.811
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.811
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.811
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.797
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000025776 RRM 12 80
ENSCAFP00000025776 RRM 98 167

Links

Other RRM family RBPs
Other Canis familiaris RBPs

225 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.793
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.793
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.789
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.786
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.786
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.786
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.786
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.786
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.786
LOC100054206 Equus caballus ENSECAG00000006699 I 0.785
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.779
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.779
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.779
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.779
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.779
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.779
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.779
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.779
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.779
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.778
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.773
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.772
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.772
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.772
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.772
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.772
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.772
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.772
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.771
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.768
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.766
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.766
LOC785445 Bos taurus ENSBTAG00000025621 I 0.766
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.766
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.766
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.766
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.766
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.766
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.764
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.764
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.764
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.759
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.759
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.759
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.759
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.757
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.757
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.757
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.757
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.757
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.757
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.757
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.757
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.754
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.754
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.753
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.752
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.752
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.752
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.752
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.752
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.752
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.752
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.752
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.752
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.750
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.750
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.750
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.750
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.750
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.750
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.750
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.747
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.746
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.745
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.745
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.745
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.745
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.745
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.745
AAH45260 Xenopus laevis AAH45260 I 0.745
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.745
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.743
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.743
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.743
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.738
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.738
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.738
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.738
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.738
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.738
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.738
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.738
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.736
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.736
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.736
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.736
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.736
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.732
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.731
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.731
CBU92546 Xenopus laevis CBU92546 I 0.731
CBF67672 Xenopus laevis CBF67672 I 0.731
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.731
AAH72090 Xenopus laevis AAH72090 I 0.731
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.731
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.730
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.730
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.730
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.729
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.727
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.727
ENSRNOG00000031316 Rattus norvegicus ENSRNOG00000031316 I 0.725
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.725
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.724
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.724
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.724
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.724
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.724
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.721
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.721
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.718
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.718
RGD1564416 Rattus norvegicus ENSRNOG00000023882 I 0.718
P17130 Xenopus laevis P17130 I 0.717
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.717
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.717
CBF67555 Xenopus laevis CBF67555 I 0.717
AAA49742 Xenopus laevis AAA49742 I 0.717
AAA49741 Xenopus laevis AAA49741 I 0.717
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.717
CBU92428 Xenopus laevis CBU92428 I 0.717
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.715
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.715
ENSETEG00000018059 Echinops telfairi ENSETEG00000018059 I 0.714
ENSCAFG00000003921 Canis familiaris ENSCAFG00000003921 I 0.714
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.714
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.712
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.710
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.710
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.710
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.710
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.710
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.710
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.709
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.707
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.707
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.706
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.706
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.703
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.703
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.703
ENSSSCG00000005428 Sus scrofa ENSSSCG00000005428 I 0.703
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.703
HNRNPA2B1 Canis familiaris ENSCAFG00000002885 I 0.700
HNRNPA2B1 Ornithorhynchus anatinus ENSOANG00000009159 I 0.700
ENSMEUG00000001084 Macropus eugenii ENSMEUG00000001084 I 0.700
HNRNPA2B1 Loxodonta africana ENSLAFG00000006902 I 0.700
HNRNPA2B1 Gorilla gorilla ENSGGOG00000017072 I 0.700
ENSMEUG00000014479 Macropus eugenii ENSMEUG00000014479 I 0.700
HNRNPA2B1 Meleagris gallopavo ENSMGAG00000010635 I 0.700
HNRNPA2B1 Monodelphis domestica ENSMODG00000000603 I 0.700
HNRNPA2B1 Macaca mulatta ENSMMUG00000003619 I 0.700
HNRNPA2B1 Myotis lucifugus ENSMLUG00000007578 I 0.700
Q5ZME1_CHICK Gallus gallus ENSGALG00000011036 I 0.700
HNRNPA2B1 Homo sapiens ENSG00000122566 D 0.700
ENSCJAG00000021872 Callithrix jacchus ENSCJAG00000021872 I 0.700
LOC100401647 Callithrix jacchus ENSCJAG00000007908 I 0.700
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.700
HNRNPA2B1 Dasypus novemcinctus ENSDNOG00000012928 I 0.700
Hnrnpa2b1 Dipodomys ordii ENSDORG00000005482 I 0.700
HNRNPA2B1 Echinops telfairi ENSETEG00000018577 I 0.700
LOC100068539 Equus caballus ENSECAG00000000782 I 0.700
Hnrnpa2b1 Mus musculus ENSMUSG00000004980 I 0.700
HNRNPA2B1 Oryctolagus cuniculus ENSOCUG00000026859 I 0.700
AAI06633 Xenopus laevis AAI06633 I 0.700
AAH46692 Xenopus laevis AAH46692 I 0.700
AAH43750 Xenopus laevis AAH43750 I 0.700
CBF67577 Xenopus laevis CBF67577 I 0.700
CBU92450 Xenopus laevis CBU92450 I 0.700
P51990 Xenopus laevis P51990 I 0.700
P51989 Xenopus laevis P51989 I 0.700
AAB59951 Xenopus laevis AAB59951 I 0.700
AAA49948 Xenopus laevis AAA49948 I 0.700
HNRNPA2B1 Pteropus vampyrus ENSPVAG00000006296 I 0.700
HNRNPA2B1 Pan troglodytes ENSPTRG00000019002 I 0.700
ENSPPYG00000017715 Pongo pygmaeus ENSPPYG00000017715 I 0.700
Hnrnpa2b1 Rattus norvegicus ENSRNOG00000011175 I 0.700
ENSSTOG00000006202 Spermophilus tridecemlineatus ENSSTOG00000006202 I 0.700
Ame_R000626 Ailuropoda melanoleuca Ame_R000626 I 0.700
HNRNPA2B1 Tursiops truncatus ENSTTRG00000000709 I 0.700
ROA2_BOVIN Bos taurus ENSBTAG00000005726 I 0.700